Variant report

Variant	rs190064850
Chromosome Location	chr11:72954484-72954485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72952515..72955647-chr11:72999946..73001920,3	MCF-7	breast:
2	chr11:72944490..72946453-chr11:72952891..72955306,2	MCF-7	breast:
3	chr11:72951072..72954969-chr11:72955033..72959684,5	MCF-7	breast:
4	chr11:72536642..72539499-chr11:72952238..72954950,2	K562	blood:
5	chr11:72953671..72955860-chr11:72968822..72970580,2	K562	blood:
6	chr11:72938389..72940654-chr11:72953845..72956300,2	MCF-7	breast:
7	chr11:72895927..72897022-chr11:72953325..72954606,11	MCF-7	breast:
8	chr11:72952611..72954570-chr11:72995302..72997462,2	MCF-7	breast:
9	chr11:72948068..72951441-chr11:72952296..72954651,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260401	Chromatin interaction
ENSG00000171631	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv1038032	chr11:72925347-72966442	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv975393	chr11:72954333-72969696	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72951800-72956200	Weak transcription	Lung	lung
2	chr11:72952000-72956800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:72953000-72962000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr11:72953200-72954800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr11:72953200-72955400	Enhancers	Spleen	Spleen
6	chr11:72953400-72954600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:72953400-72954800	Enhancers	Placenta	Placenta
8	chr11:72953800-72956000	Weak transcription	Osteobl	bone
9	chr11:72953800-72956600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:72954000-72955400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:72954000-72963600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:72954200-72954600	Enhancers	A549	lung
13	chr11:72954200-72954600	Enhancers	GM12878-XiMat	blood
14	chr11:72954200-72954600	Enhancers	HepG2	liver
15	chr11:72954200-72954800	Strong transcription	Esophagus	oesophagus
16	chr11:72954200-72954800	Enhancers	Fetal Lung	lung
17	chr11:72954200-72955600	Weak transcription	Brain Germinal Matrix	brain
18	chr11:72954200-72955600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:72954200-72955800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:72954200-72955800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:72954200-72955800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:72954200-72955800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:72954200-72955800	Weak transcription	Fetal Heart	heart
24	chr11:72954200-72956000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:72954200-72956000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:72954200-72956000	Weak transcription	Right Atrium	heart
27	chr11:72954200-72956200	Weak transcription	NHDF-Ad	bronchial
28	chr11:72954200-72956400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:72954200-72956800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:72954200-72956800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:72954200-72957000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:72954200-72958200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:72954200-72959600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:72954200-72959800	Weak transcription	Hela-S3	cervix
35	chr11:72954200-72961000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:72954200-72964000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:72954200-72968600	Weak transcription	Left Ventricle	heart
38	chr11:72954400-72954600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:72954400-72955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:72954400-72955800	Weak transcription	Right Ventricle	heart
41	chr11:72954400-72959800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:72954400-72960600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr11:72954400-72967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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