Variant report

Variant	rs1900663
Chromosome Location	chr3:79048517-79048518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11127638	0.86[EUR][1000 genomes]
rs11923198	0.86[EUR][1000 genomes]
rs12495750	0.86[EUR][1000 genomes]
rs13096526	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1349023	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1349024	0.86[EUR][1000 genomes]
rs1374883	0.86[EUR][1000 genomes]
rs1374885	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1374886	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1374887	0.86[EUR][1000 genomes]
rs1374888	0.86[EUR][1000 genomes]
rs1374889	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1947154	0.86[EUR][1000 genomes]
rs2871747	0.86[EUR][1000 genomes]
rs4680946	1.00[EUR][1000 genomes]
rs6548603	0.86[EUR][1000 genomes]
rs6548604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6548605	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6548606	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6774082	0.86[EUR][1000 genomes]
rs6788693	0.86[EUR][1000 genomes]
rs6797152	0.86[EUR][1000 genomes]
rs6804234	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625043	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646169	0.86[EUR][1000 genomes]
rs9845900	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79040800-79062000	Weak transcription	Ovary	ovary
2	chr3:79043000-79048600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:79043200-79051800	Weak transcription	Fetal Brain Male	brain
4	chr3:79044600-79051200	Weak transcription	Brain Angular Gyrus	brain
5	chr3:79044600-79053800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:79044600-79061600	Weak transcription	Fetal Kidney	kidney
7	chr3:79044800-79064600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:79048000-79053000	Weak transcription	HepG2	liver
9	chr3:79048200-79054200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:79048400-79048800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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