Variant report

Variant	rs190077213
Chromosome Location	chr14:45396002-45396003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:45395985..45398844-chr14:45429401..45432165,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198718	Chromatin interaction
ENSG00000179454	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869289	chr14:44752382-45447415	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv901832	chr14:44847444-45415597	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
6	nsv1053437	chr14:45232269-45424222	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
9	nsv819173	chr14:45395602-45396192	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45368200-45397400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:45375400-45403000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:45382000-45400600	Weak transcription	Left Ventricle	heart
4	chr14:45382000-45408000	Weak transcription	Pancreas	Pancrea
5	chr14:45383000-45397600	Weak transcription	Liver	Liver
6	chr14:45383000-45405800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:45384400-45406800	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:45384800-45397000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:45384800-45397400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:45384800-45408000	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:45386600-45405600	Weak transcription	Fetal Lung	lung
12	chr14:45386800-45405600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr14:45388400-45398000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:45389600-45406800	Weak transcription	HSMMtube	muscle
15	chr14:45390000-45397400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr14:45390200-45398200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr14:45390200-45406800	Weak transcription	Fetal Stomach	stomach
18	chr14:45390400-45400600	Weak transcription	Primary T cells from cord blood	blood
19	chr14:45390400-45406600	Weak transcription	Brain Germinal Matrix	brain
20	chr14:45390400-45408200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:45390600-45397600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr14:45390600-45408400	Weak transcription	Fetal Brain Female	brain
23	chr14:45391200-45397000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:45391200-45400000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:45391200-45405800	Weak transcription	Fetal Intestine Large	intestine
26	chr14:45391200-45411000	Weak transcription	HSMM	muscle
27	chr14:45391200-45413000	Weak transcription	HUVEC	blood vessel
28	chr14:45391400-45406400	Weak transcription	Fetal Intestine Small	intestine
29	chr14:45391400-45406800	Weak transcription	Thymus	Thymus
30	chr14:45392200-45397400	Weak transcription	Adipose Nuclei	Adipose
31	chr14:45392400-45397400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:45392800-45396800	Weak transcription	Primary B cells from cord blood	blood
33	chr14:45393000-45397400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:45393200-45396800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:45394200-45413800	Weak transcription	HepG2	liver
36	chr14:45394400-45396200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:45394400-45397600	Weak transcription	NHDF-Ad	bronchial
38	chr14:45394400-45408000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr14:45394600-45408000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr14:45394800-45396800	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr14:45394800-45406800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr14:45395000-45396800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr14:45395000-45397000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr14:45395000-45408000	Weak transcription	Gastric	stomach
45	chr14:45395200-45397000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr14:45395200-45397600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:45395200-45397600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:45395200-45403000	Weak transcription	GM12878-XiMat	blood
49	chr14:45395200-45403200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:45395200-45403400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links