Variant report

Variant	rs190078234
Chromosome Location	chr6:140029051-140029052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140028951..140031620-chr6:140084219..140086898,2	K562	blood:
2	chr6:139694377..139697407-chr6:140028981..140031872,3	MCF-7	breast:
3	chr6:139695139..139697062-chr6:140028740..140031054,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140022400-140029200	Weak transcription	NHDF-Ad	bronchial
2	chr6:140027800-140032000	Enhancers	Colon Smooth Muscle	Colon
3	chr6:140028400-140029200	Weak transcription	Fetal Intestine Large	intestine
4	chr6:140028400-140029600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr6:140028400-140030400	Enhancers	Rectal Smooth Muscle	rectum
6	chr6:140028400-140034200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:140028600-140029600	Weak transcription	Fetal Kidney	kidney
8	chr6:140028600-140033800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:140028800-140029800	Enhancers	Hela-S3	cervix
10	chr6:140028800-140030400	Enhancers	Fetal Intestine Small	intestine
11	chr6:140029000-140029400	Enhancers	Pancreas	Pancrea
12	chr6:140029000-140029400	Enhancers	Spleen	Spleen
13	chr6:140029000-140029800	Enhancers	Fetal Heart	heart
14	chr6:140029000-140030400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:140029000-140030400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:140029000-140030400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr6:140029000-140030600	Enhancers	Fetal Lung	lung
18	chr6:140029000-140030600	Enhancers	HUVEC	blood vessel
19	chr6:140029000-140030800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:140029000-140030800	Enhancers	Placenta	Placenta
21	chr6:140029000-140030800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:140029000-140031000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:140029000-140031000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:140029000-140031000	Enhancers	Ovary	ovary
25	chr6:140029000-140032000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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