Variant report

Variant	rs190079
Chromosome Location	chr2:21584664-21584665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs219511	1.00[AFR][1000 genomes]
rs219514	1.00[AFR][1000 genomes]
rs219524	1.00[AFR][1000 genomes]
rs219526	1.00[AFR][1000 genomes]
rs677784	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv455863	chr2:21547003-21615340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv581170	chr2:21547003-21615340	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21581600-21585800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:21582000-21634600	Weak transcription	Aorta	Aorta
3	chr2:21583200-21586000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:21583600-21585200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:21583600-21585800	Enhancers	NHEK	skin
6	chr2:21584000-21585400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:21584000-21585400	Enhancers	Fetal Lung	lung
8	chr2:21584400-21584800	Flanking Active TSS	HMEC	breast
9	chr2:21584400-21585400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:21584400-21585400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links