Variant report

Variant	rs190133452
Chromosome Location	chr14:35784097-35784098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35779341..35784196-chr14:35869353..35875195,7	K562	blood:
2	chr14:35775541..35779277-chr14:35783449..35786784,6	MCF-7	breast:
3	chr14:35783009..35785578-chr14:35809337..35811839,2	MCF-7	breast:
4	chr14:35782340..35785234-chr14:35821689..35824167,2	K562	blood:
5	chr14:35777000..35779255-chr14:35781790..35784953,3	K562	blood:

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction
ENSG00000100902	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv1038396	chr14:35714499-35788189	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1045288	chr14:35735886-35788189	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1043840	chr14:35739319-35791879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3524889	chr14:35783568-35786564	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3524890	chr14:35783568-35786564	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35763200-35789600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:35766200-35792000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:35769200-35800800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:35770400-35789000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:35771600-35786800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:35772400-35788800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:35772400-35790400	Weak transcription	Fetal Heart	heart
8	chr14:35772600-35789000	Strong transcription	HepG2	liver
9	chr14:35772800-35788200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr14:35773400-35789000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr14:35774200-35789800	Strong transcription	Fetal Thymus	thymus
12	chr14:35774600-35784200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:35774600-35789400	Strong transcription	Dnd41	blood
14	chr14:35775000-35789200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:35775000-35790600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr14:35775800-35785400	Strong transcription	A549	lung
17	chr14:35775800-35789200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr14:35776400-35789000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:35776400-35789000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr14:35776600-35784200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:35776600-35788800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr14:35776600-35789000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:35776800-35784600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:35776800-35784600	Weak transcription	Pancreas	Pancrea
25	chr14:35776800-35788400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:35776800-35788600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr14:35776800-35789200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:35777000-35788200	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr14:35777000-35788200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:35777000-35788200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr14:35777000-35788200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr14:35777000-35789000	Strong transcription	Liver	Liver
33	chr14:35777000-35789400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:35777200-35784600	Strong transcription	HUVEC	blood vessel
35	chr14:35777200-35784800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr14:35777200-35784800	Strong transcription	Placenta	Placenta
37	chr14:35777200-35788200	Strong transcription	Osteobl	bone
38	chr14:35777200-35788400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:35777200-35788600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr14:35777200-35788800	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr14:35777200-35788800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:35777200-35789000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr14:35777400-35788400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr14:35777400-35788400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:35777400-35789000	Strong transcription	Adipose Nuclei	Adipose
46	chr14:35777400-35789200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr14:35777600-35788200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr14:35777600-35788400	Strong transcription	GM12878-XiMat	blood
49	chr14:35777600-35789000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:35777600-35789000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links