Variant report

Variant	rs190138588
Chromosome Location	chr9:93799411-93799412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93677265..93679731-chr9:93797817..93800776,2	MCF-7	breast:
2	chr9:93799032..93800018-chr9:94188281..94189014,4	MCF-7	breast:
3	chr9:93799113..93799705-chr9:94187764..94188556,2	MCF-7	breast:
4	chr9:93797874..93801408-chr9:93805945..93809060,4	MCF-7	breast:
5	chr9:93786992..93789003-chr9:93797212..93799731,2	MCF-7	breast:
6	chr9:93798539..93802041-chr9:94184980..94187268,5	MCF-7	breast:
7	chr9:93798149..93802099-chr9:94185060..94188043,3	K562	blood:
8	chr9:93798950..93801192-chr9:94180213..94183169,2	MCF-7	breast:
9	chr9:93797668..93803133-chr9:94183972..94188624,9	MCF-7	breast:
10	chr9:93798149..93801072-chr9:94184955..94188043,3	K562	blood:
11	chr9:93747626..93749444-chr9:93797575..93800020,2	MCF-7	breast:
12	chr9:93797970..93799747-chr9:93818400..93820922,2	MCF-7	breast:
13	chr9:93752160..93754281-chr9:93798521..93801349,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233081	Chromatin interaction
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv523562	chr9:93791410-93800017	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3443359	chr9:93798631-93803029	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93796000-93800200	Enhancers	Primary B cells from peripheral blood	blood
2	chr9:93797400-93801200	Enhancers	Placenta	Placenta
3	chr9:93797600-93800400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:93797800-93799800	Enhancers	GM12878-XiMat	blood
5	chr9:93798200-93800000	Enhancers	Dnd41	blood
6	chr9:93798200-93801000	Enhancers	Esophagus	oesophagus
7	chr9:93798400-93800400	Enhancers	Fetal Lung	lung
8	chr9:93798600-93802000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:93798600-93802400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:93798800-93799600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr9:93798800-93800000	Enhancers	Fetal Thymus	thymus
12	chr9:93798800-93800400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:93798800-93800600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:93798800-93800800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:93799000-93799600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
16	chr9:93799000-93800000	Enhancers	Primary hematopoietic stem cells	blood
17	chr9:93799000-93800000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr9:93799000-93800000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr9:93799000-93800000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr9:93799000-93800200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr9:93799000-93800200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr9:93799000-93800600	Enhancers	NH-A	brain
23	chr9:93799000-93800800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr9:93799000-93801000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr9:93799000-93801200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:93799000-93802800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:93799200-93799600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:93799200-93799600	Active TSS	Fetal Brain Female	brain
29	chr9:93799200-93799600	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr9:93799200-93799800	Enhancers	Right Ventricle	heart
31	chr9:93799200-93799800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr9:93799200-93800000	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr9:93799200-93800000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
34	chr9:93799200-93800200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
35	chr9:93799200-93800200	Enhancers	Primary T cells from cord blood	blood
36	chr9:93799200-93800200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr9:93799200-93800400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:93799200-93800400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:93799200-93800400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
40	chr9:93799200-93800400	Enhancers	NHDF-Ad	bronchial
41	chr9:93799200-93800400	Enhancers	NHLF	lung
42	chr9:93799200-93800600	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr9:93799200-93800600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:93799200-93800600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:93799200-93800600	Enhancers	Psoas Muscle	Psoas
46	chr9:93799200-93800600	Flanking Active TSS	HepG2	liver
47	chr9:93799200-93800800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:93799200-93800800	Flanking Active TSS	A549	lung
49	chr9:93799200-93801000	Enhancers	H1 Cell Line	embryonic stem cell
50	chr9:93799200-93801000	Enhancers	Fetal Intestine Large	intestine

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