Variant report

Variant	rs190164573
Chromosome Location	chr12:30043798-30043799
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv469191	chr12:29939628-30098770	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv557958	chr12:29939628-30098770	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv526146	chr12:29989292-30112823	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2758302	chr12:30023167-30175232	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2759889	chr12:30023167-30175232	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3346689	chr12:30043614-30044032	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3496423	chr12:30043626-30044063	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3496422	chr12:30043643-30044000	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3485040	chr12:30043659-30044015	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3485051	chr12:30043680-30044017	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3485063	chr12:30043688-30043975	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3376971	chr12:30043703-30043882	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3485074	chr12:30043762-30043948	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3496424	chr12:30043762-30043948	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3350643	chr12:30043777-30043997	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30037800-30049400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:30039800-30048400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:30042800-30048600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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