The 2.0 version of rSNPBase

Variant report

Variant rs190172859
Chromosome Location chr11:34078730-34078731
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:34073800-34079000 Transcr. at gene 5' and 3' Dnd41 blood
2 chr11:34074600-34079200 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
3 chr11:34074800-34078800 Transcr. at gene 5' and 3' hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr11:34075400-34087000 Weak transcription Gastric stomach
5 chr11:34075400-34094200 Weak transcription Placenta Amnion Placenta Amnion
6 chr11:34075400-34094400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr11:34075400-34103800 Weak transcription Aorta Aorta
8 chr11:34075600-34079000 Enhancers Brain Hippocampus Middle brain
9 chr11:34075600-34079400 Weak transcription Psoas Muscle Psoas
10 chr11:34075600-34082600 Enhancers Primary T helper naive cells from peripheral blood blood
11 chr11:34075600-34082600 Enhancers Primary T killer naive cells fromperipheralblood blood
12 chr11:34075600-34082800 Enhancers Primary T killer memory cells from peripheral blood blood
13 chr11:34075600-34088400 Weak transcription Right Atrium heart
14 chr11:34075600-34093600 Weak transcription ES-WA7 Cell Line embryonic stem cell
15 chr11:34075600-34100200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr11:34075800-34079600 Enhancers Primary T helper naive cells fromperipheralblood blood
17 chr11:34075800-34083400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
18 chr11:34075800-34093600 Weak transcription HSMMtube muscle
19 chr11:34076000-34079000 Enhancers Fetal Heart heart
20 chr11:34076000-34079200 Genic enhancers Cortex derived primary cultured neurospheres brain
21 chr11:34076200-34081400 Strong transcription HSMM muscle
22 chr11:34076200-34089400 Weak transcription H9 Cell Line embryonic stem cell
23 chr11:34076400-34079000 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr11:34076400-34079200 Transcr. at gene 5' and 3' HUES48 Cell Line embryonic stem cell
25 chr11:34076400-34079200 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr11:34076400-34079600 Transcr. at gene 5' and 3' GM12878-XiMat blood
27 chr11:34076600-34079000 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr11:34076600-34079000 Genic enhancers Muscle Satellite Cultured Cells --
29 chr11:34076600-34079000 Genic enhancers Fetal Intestine Large intestine
30 chr11:34076600-34079200 Genic enhancers Primary T helper cells fromperipheralblood blood
31 chr11:34076600-34079200 Genic enhancers HUVEC blood vessel
32 chr11:34076600-34079600 Enhancers Fetal Brain Male brain
33 chr11:34076600-34080200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr11:34076800-34079000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
35 chr11:34076800-34080200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
36 chr11:34077000-34079000 Enhancers Brain Substantia Nigra brain
37 chr11:34077000-34100600 Weak transcription Esophagus oesophagus
38 chr11:34077200-34078800 Genic enhancers Primary B cells from cord blood blood
39 chr11:34077200-34078800 Weak transcription Fetal Muscle Leg muscle
40 chr11:34077200-34078800 Weak transcription Placenta Placenta
41 chr11:34077200-34079000 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
42 chr11:34077200-34079000 Enhancers iPS-15b Cell Line embryonic stem cell
43 chr11:34077200-34079000 Strong transcription Primary T cells fromperipheralblood blood
44 chr11:34077200-34079000 Enhancers Adipose Nuclei Adipose
45 chr11:34077200-34079000 Enhancers Brain Cingulate Gyrus brain
46 chr11:34077200-34079200 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr11:34077200-34079200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
48 chr11:34077200-34079200 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
49 chr11:34077200-34079200 Enhancers Brain Anterior Caudate brain
50 chr11:34077200-34080400 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015