Variant report

Variant	rs1901920
Chromosome Location	chr11:9530949-9530950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9482061..9484730-chr11:9528660..9531358,3	MCF-7	breast:
2	chr11:9528918..9531416-chr11:9532180..9535930,3	K562	blood:
3	chr11:9530061..9531905-chr11:9533951..9536016,2	MCF-7	breast:
4	chr11:9481813..9484780-chr11:9528009..9531165,4	K562	blood:

Variant related genes	Relation type
ENSG00000166478	Chromatin interaction
ENSG00000268403	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1377668	0.94[AFR][1000 genomes]
rs1470893	0.94[AFR][1000 genomes]
rs1470894	0.94[AFR][1000 genomes]
rs16906849	0.94[AFR][1000 genomes]
rs2034692	0.83[AFR][1000 genomes]
rs2313091	0.83[AFR][1000 genomes]
rs4412786	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
3	nsv1039537	chr11:9455387-9535970	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9484600-9544800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:9491400-9551600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:9501800-9534000	Weak transcription	Psoas Muscle	Psoas
4	chr11:9518800-9534000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:9519200-9532000	Weak transcription	NHDF-Ad	bronchial
6	chr11:9519200-9534200	Weak transcription	Fetal Brain Female	brain
7	chr11:9520600-9532200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:9521000-9545200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:9521600-9532200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:9523000-9534000	Weak transcription	HMEC	breast
11	chr11:9523400-9531200	Weak transcription	Small Intestine	intestine
12	chr11:9523400-9532000	Weak transcription	Osteobl	bone
13	chr11:9523400-9534000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:9523400-9534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:9523400-9534000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:9523400-9534000	Weak transcription	Aorta	Aorta
17	chr11:9523400-9534000	Weak transcription	Brain Angular Gyrus	brain
18	chr11:9523400-9534000	Weak transcription	Fetal Brain Male	brain
19	chr11:9523400-9534200	Weak transcription	Right Ventricle	heart
20	chr11:9523400-9550800	Weak transcription	Colonic Mucosa	Colon
21	chr11:9523400-9551000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:9523600-9532200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:9525200-9532000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:9525200-9532200	Weak transcription	NH-A	brain
25	chr11:9525200-9533600	Weak transcription	Placenta	Placenta
26	chr11:9525400-9534000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:9525800-9532200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:9526800-9532200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr11:9526800-9532200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:9527000-9532600	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr11:9528000-9531600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:9528000-9534800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr11:9528000-9540000	Strong transcription	Fetal Thymus	thymus
34	chr11:9528400-9531000	Strong transcription	Primary T cells from cord blood	blood
35	chr11:9528400-9532200	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:9528400-9532200	Weak transcription	Fetal Heart	heart
37	chr11:9528400-9533600	Weak transcription	Fetal Lung	lung
38	chr11:9528600-9531800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:9528600-9532000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:9528600-9532600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:9528800-9531000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:9528800-9531400	Strong transcription	GM12878-XiMat	blood
43	chr11:9528800-9532200	Weak transcription	HSMMtube	muscle
44	chr11:9528800-9532800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:9528800-9534000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:9528800-9534000	Weak transcription	Ovary	ovary
47	chr11:9528800-9534200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:9528800-9534200	Weak transcription	Hela-S3	cervix
49	chr11:9528800-9550400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:9529000-9531400	Weak transcription	A549	lung

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