Variant report

Variant	rs1902148
Chromosome Location	chr15:33417552-33417553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33358876..33361429-chr15:33414784..33417965,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248905	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11072253	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11629551	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11629580	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11629582	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11635767	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12901347	0.82[AMR][1000 genomes]
rs12903383	0.83[AMR][1000 genomes]
rs1454987	0.91[ASN][1000 genomes]
rs2085180	0.90[ASN][1000 genomes]
rs2085181	0.91[ASN][1000 genomes]
rs2257131	0.91[ASN][1000 genomes]
rs2444953	0.86[ASN][1000 genomes]
rs2444956	0.88[ASN][1000 genomes]
rs2444960	0.91[ASN][1000 genomes]
rs2444964	0.98[ASN][1000 genomes]
rs2444965	0.98[ASN][1000 genomes]
rs2444966	0.98[ASN][1000 genomes]
rs2444967	0.98[ASN][1000 genomes]
rs2444969	0.95[ASN][1000 genomes]
rs2444970	0.98[ASN][1000 genomes]
rs2444972	0.95[ASN][1000 genomes]
rs2444973	0.95[ASN][1000 genomes]
rs2444974	0.95[ASN][1000 genomes]
rs2444975	0.95[ASN][1000 genomes]
rs2444977	0.85[ASN][1000 genomes]
rs2468746	0.99[ASN][1000 genomes]
rs2468748	0.98[ASN][1000 genomes]
rs2468749	0.98[ASN][1000 genomes]
rs2468750	0.98[ASN][1000 genomes]
rs2468752	0.98[ASN][1000 genomes]
rs2468755	0.95[ASN][1000 genomes]
rs2468756	0.92[ASN][1000 genomes]
rs345759	0.86[ASN][1000 genomes]
rs345762	0.86[ASN][1000 genomes]
rs3861197	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4779607	0.84[AMR][1000 genomes]
rs4779608	0.84[AMR][1000 genomes]
rs4779609	0.84[AMR][1000 genomes]
rs4779610	0.83[AMR][1000 genomes]
rs4780082	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164682	0.84[AMR][1000 genomes]
rs7165173	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33406400-33418200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:33406800-33418400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:33407000-33418400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:33411800-33418000	Weak transcription	Fetal Kidney	kidney
5	chr15:33411800-33420200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:33412600-33418400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:33414600-33419200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:33415400-33418000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:33415800-33418400	Enhancers	Fetal Thymus	thymus
10	chr15:33416000-33418200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:33416000-33418400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr15:33416000-33418400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:33416000-33418400	Enhancers	Thymus	Thymus
14	chr15:33416200-33418200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:33416200-33419000	Enhancers	HSMMtube	muscle
16	chr15:33416400-33417800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr15:33416600-33418000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:33416600-33418200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:33416600-33420400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:33416800-33418200	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:33416800-33418400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:33416800-33418400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:33416800-33418800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr15:33417000-33418000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:33417000-33418000	Weak transcription	HSMM	muscle
26	chr15:33417000-33418400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:33417000-33418400	Weak transcription	Psoas Muscle	Psoas
28	chr15:33417000-33418400	Enhancers	Dnd41	blood
29	chr15:33417000-33418600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr15:33417200-33417800	Enhancers	Osteobl	bone
31	chr15:33417200-33418400	Weak transcription	NH-A	brain
32	chr15:33417200-33419600	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr15:33417400-33418000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:33417400-33418200	Enhancers	Primary T cells from cord blood	blood
35	chr15:33417400-33418400	Weak transcription	NHDF-Ad	bronchial
36	chr15:33417400-33418400	Weak transcription	NHLF	lung
37	chr15:33417400-33420200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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