Variant report

Variant	rs190233475
Chromosome Location	chr9:71398815-71398816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:71393340..71397150-chr9:71397904..71401826,5	MCF-7	breast:
2	chr9:71397068..71400120-chr9:71405362..71406999,3	MCF-7	breast:
3	chr9:71397331..71400852-chr9:71402232..71407061,5	K562	blood:
4	chr9:71394389..71396073-chr9:71398400..71400500,2	K562	blood:
5	chr9:71398048..71400496-chr9:71420484..71423422,2	K562	blood:
6	chr9:71347274..71349362-chr9:71397346..71399719,2	K562	blood:

Variant related genes	Relation type
ENSG00000187866	Chromatin interaction
ENSG00000236998	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71395600-71400200	Flanking Active TSS	Brain Germinal Matrix	brain
2	chr9:71395800-71400200	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:71396000-71399000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:71396000-71399000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:71396000-71399200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:71396000-71400400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:71396000-71402400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:71396000-71403400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:71396000-71408200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:71396200-71399000	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr9:71396200-71399000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr9:71396200-71399000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:71396200-71399000	Enhancers	HUVEC	blood vessel
14	chr9:71396200-71399200	Enhancers	Primary hematopoietic stem cells	blood
15	chr9:71396200-71399200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr9:71396200-71399600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:71396200-71400600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:71396200-71400800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr9:71396200-71400800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr9:71396200-71400800	Enhancers	Brain Hippocampus Middle	brain
21	chr9:71396200-71400800	Enhancers	Fetal Heart	heart
22	chr9:71396200-71401000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr9:71396200-71401000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr9:71396200-71409800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:71396400-71399000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:71396400-71399000	Enhancers	HepG2	liver
27	chr9:71396400-71400200	Enhancers	Colon Smooth Muscle	Colon
28	chr9:71396600-71399000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr9:71396600-71399000	Enhancers	Fetal Thymus	thymus
30	chr9:71396600-71399200	Flanking Active TSS	Fetal Brain Female	brain
31	chr9:71396600-71400400	Enhancers	Thymus	Thymus
32	chr9:71396800-71399000	Flanking Active TSS	Fetal Brain Male	brain
33	chr9:71397200-71399000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:71397200-71399200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:71397200-71400000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:71397200-71400200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:71397200-71401000	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr9:71397200-71402200	Weak transcription	A549	lung
39	chr9:71397200-71403800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:71397200-71404200	Weak transcription	Esophagus	oesophagus
41	chr9:71397200-71409600	Weak transcription	Colonic Mucosa	Colon
42	chr9:71397200-71417400	Weak transcription	Lung	lung
43	chr9:71397600-71399000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr9:71397600-71399000	Flanking Active TSS	GM12878-XiMat	blood
45	chr9:71397600-71399200	Enhancers	Liver	Liver
46	chr9:71397600-71399600	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr9:71397600-71399800	Weak transcription	HSMM	muscle
48	chr9:71397800-71399000	Enhancers	Fetal Muscle Leg	muscle
49	chr9:71397800-71399000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr9:71397800-71399200	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links