Variant report

Variant	rs190246459
Chromosome Location	chrX:65949196-65949197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:64801614..64802539-chrX:65948756..65949257,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	nsv916917	chrX:65628203-65966658	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv498092	chrX:65628203-66170369	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv949354	chrX:65705774-65952293	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv432334	chrX:65705774-66018207	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv520630	chrX:65706079-66017027	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv529910	chrX:65738026-66025016	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv532865	chrX:65768210-65952059	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv6935	chrX:65943016-65987709	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	nsv829371	chrX:65945216-65954615	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65948400-65949200	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chrX:65948400-65949200	Active TSS	Primary T cells fromperipheralblood	blood
3	chrX:65948400-65949200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chrX:65948400-65949400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chrX:65948600-65949200	Active TSS	H1 Cell Line	embryonic stem cell
6	chrX:65948600-65949200	Active TSS	H9 Cell Line	embryonic stem cell
7	chrX:65948600-65949200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chrX:65948600-65949200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chrX:65948600-65949200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chrX:65948600-65949200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chrX:65948600-65949200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chrX:65948600-65949200	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chrX:65948600-65949200	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chrX:65948600-65949200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chrX:65948600-65949200	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chrX:65948600-65949200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chrX:65948600-65949200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chrX:65948600-65949200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chrX:65948600-65949200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chrX:65948600-65949200	Active TSS	Primary B cells from cord blood	blood
21	chrX:65948600-65949200	Active TSS	Primary T cells from cord blood	blood
22	chrX:65948600-65949200	Active TSS	Primary hematopoietic stem cells	blood
23	chrX:65948600-65949200	Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chrX:65948600-65949200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chrX:65948600-65949200	Active TSS	Primary T helper cells PMA-I stimulated	--
26	chrX:65948600-65949200	Active TSS	Primary T helper cells fromperipheralblood	blood
27	chrX:65948600-65949200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chrX:65948600-65949200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chrX:65948600-65949200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chrX:65948600-65949200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chrX:65948600-65949200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chrX:65948600-65949200	Active TSS	Muscle Satellite Cultured Cells	--
33	chrX:65948600-65949200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chrX:65948600-65949200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chrX:65948600-65949200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chrX:65948600-65949200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chrX:65948600-65949200	Active TSS	Brain Hippocampus Middle	brain
38	chrX:65948600-65949200	Active TSS	Colon Smooth Muscle	Colon
39	chrX:65948600-65949200	Active TSS	Duodenum Mucosa	Duodenum
40	chrX:65948600-65949200	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chrX:65948600-65949200	Active TSS	Fetal Brain Female	brain
42	chrX:65948600-65949200	Active TSS	Fetal Kidney	kidney
43	chrX:65948600-65949200	Active TSS	Rectal Mucosa Donor 29	rectum
44	chrX:65948600-65949200	Active TSS	Rectal Mucosa Donor 31	rectum
45	chrX:65948600-65949200	Active TSS	Rectal Smooth Muscle	rectum
46	chrX:65948600-65949200	Active TSS	Right Atrium	heart
47	chrX:65948600-65949200	Active TSS	Stomach Smooth Muscle	stomach
48	chrX:65948600-65949200	Active TSS	HMEC	breast
49	chrX:65948600-65949200	Active TSS	Monocytes-CD14+_RO01746	blood
50	chrX:65948600-65949200	Active TSS	NH-A	brain

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