Variant report

Variant	rs190290592
Chromosome Location	chr6:15764904-15764905
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2762581	chr6:15763793-15774802	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv518098	chr6:15764675-15771988	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15759200-15770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
3	chr6:15763200-15766000	Enhancers	Fetal Intestine Large	intestine
4	chr6:15763400-15765200	Enhancers	Liver	Liver
5	chr6:15763400-15765600	Enhancers	Fetal Intestine Small	intestine
6	chr6:15763600-15765000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:15763600-15765000	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:15763600-15765000	Enhancers	Fetal Lung	lung
9	chr6:15763600-15765600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:15763800-15765000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:15764200-15765000	Enhancers	Gastric	stomach
12	chr6:15764400-15765000	Enhancers	Rectal Smooth Muscle	rectum
13	chr6:15764400-15768800	Weak transcription	K562	blood
14	chr6:15764600-15765000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:15764600-15766200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:15764800-15770200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links