Variant report

Variant	rs190355046
Chromosome Location	chr19:37743665-37743666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr19:37743654-37743845	K562	blood:	n/a	n/a
2	SPI1	chr19:37743601-37743819	K562	blood:	n/a	n/a
3	MXI1	chr19:37741979-37743794	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000226686	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv9717	chr19:37721760-37796698	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv960834	chr19:37742831-37749967	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37710400-37744200	ZNF genes & repeats	Liver	Liver
2	chr19:37741200-37743800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
3	chr19:37741200-37744000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:37741200-37745600	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr19:37741400-37743800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr19:37741400-37743800	Active TSS	Brain Substantia Nigra	brain
7	chr19:37741400-37743800	Active TSS	Fetal Kidney	kidney
8	chr19:37741600-37749200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr19:37741800-37744000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr19:37742000-37743800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr19:37742000-37743800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
12	chr19:37742000-37743800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr19:37742000-37743800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:37742000-37743800	Active TSS	Muscle Satellite Cultured Cells	--
15	chr19:37742000-37743800	Active TSS	Colon Smooth Muscle	Colon
16	chr19:37742000-37743800	Active TSS	Rectal Smooth Muscle	rectum
17	chr19:37742000-37743800	ZNF genes & repeats	NHEK	skin
18	chr19:37742000-37744000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr19:37742000-37744000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
20	chr19:37742200-37744000	ZNF genes & repeats	Placenta	Placenta
21	chr19:37742200-37744200	ZNF genes & repeats	Lung	lung
22	chr19:37743000-37743800	Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr19:37743200-37743800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr19:37743200-37743800	Flanking Active TSS	Brain Germinal Matrix	brain
25	chr19:37743200-37743800	Flanking Active TSS	Fetal Brain Male	brain
26	chr19:37743200-37743800	Flanking Active TSS	Fetal Muscle Trunk	muscle
27	chr19:37743200-37743800	Active TSS	HSMM	muscle
28	chr19:37743400-37743800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr19:37743400-37743800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr19:37743400-37743800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr19:37743400-37743800	Flanking Active TSS	Brain Anterior Caudate	brain
32	chr19:37743400-37743800	Flanking Active TSS	Brain Cingulate Gyrus	brain
33	chr19:37743400-37743800	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr19:37743400-37743800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr19:37743400-37743800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr19:37743400-37743800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
37	chr19:37743600-37743800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr19:37743600-37743800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr19:37743600-37743800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr19:37743600-37743800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr19:37743600-37743800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr19:37743600-37743800	Enhancers	Brain Angular Gyrus	brain
43	chr19:37743600-37743800	Enhancers	Fetal Brain Female	brain
44	chr19:37743600-37743800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr19:37743600-37743800	Enhancers	Fetal Lung	lung
46	chr19:37743600-37743800	Enhancers	Fetal Muscle Leg	muscle
47	chr19:37743600-37743800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr19:37743600-37743800	Active TSS	Stomach Smooth Muscle	stomach
49	chr19:37743600-37744200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr19:37743600-37745400	Weak transcription	Right Ventricle	heart

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