Variant report

Variant	rs190389091
Chromosome Location	chr14:64361248-64361249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64319794..64321904-chr14:64361235..64363695,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv564904	chr14:64346190-64416898	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1793389	chr14:64346190-64457224	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv826965	chr14:64360774-64366612	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64336800-64362800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:64337000-64365200	Weak transcription	Fetal Thymus	thymus
3	chr14:64337800-64403800	Weak transcription	Thymus	Thymus
4	chr14:64339400-64366800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:64341400-64366800	Weak transcription	Primary T cells from cord blood	blood
6	chr14:64342800-64368400	Weak transcription	Esophagus	oesophagus
7	chr14:64349400-64366600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr14:64349600-64366000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:64352800-64366800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr14:64355200-64362000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr14:64357000-64363600	Enhancers	Liver	Liver
12	chr14:64357200-64361600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:64357200-64362400	Enhancers	Fetal Stomach	stomach
14	chr14:64357800-64364800	Weak transcription	Fetal Intestine Large	intestine
15	chr14:64357800-64366600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr14:64358000-64362600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:64358000-64364400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr14:64358200-64375800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:64358200-64377600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:64358400-64361400	Enhancers	Left Ventricle	heart
21	chr14:64358400-64365400	Enhancers	Adipose Nuclei	Adipose
22	chr14:64358400-64366000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:64358600-64363000	Weak transcription	Fetal Intestine Small	intestine
24	chr14:64358600-64364400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:64358600-64365800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:64358800-64363000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr14:64358800-64377600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:64359000-64361400	Enhancers	Brain Germinal Matrix	brain
29	chr14:64359000-64361400	Enhancers	Osteobl	bone
30	chr14:64359000-64363000	Weak transcription	Small Intestine	intestine
31	chr14:64359000-64366400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr14:64359000-64367800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr14:64359200-64362800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr14:64359200-64363000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:64359400-64361400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:64359400-64361400	Enhancers	Fetal Muscle Trunk	muscle
37	chr14:64359400-64361400	Enhancers	Fetal Muscle Leg	muscle
38	chr14:64359400-64362600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr14:64359800-64361400	Enhancers	Fetal Heart	heart
40	chr14:64359800-64361800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:64359800-64364200	Weak transcription	Dnd41	blood
42	chr14:64360000-64361400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr14:64360000-64361400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr14:64360000-64361400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr14:64360000-64361400	Enhancers	Gastric	stomach
46	chr14:64360000-64361400	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr14:64360000-64361800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:64360000-64361800	Enhancers	Right Atrium	heart
49	chr14:64360000-64361800	Enhancers	Right Ventricle	heart
50	chr14:64360000-64365000	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links