Variant report

Variant	rs190414029
Chromosome Location	chr8:103779780-103779781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103769042..103771563-chr8:103778663..103780380,2	MCF-7	breast:
2	chr8:103775938..103779802-chr8:103800388..103802850,3	MCF-7	breast:
3	chr8:103778765..103784253-chr8:103785133..103788553,5	MCF-7	breast:
4	chr8:103777223..103779993-chr8:103798108..103799875,2	MCF-7	breast:
5	chr8:103662477..103667937-chr8:103778259..103783622,7	MCF-7	breast:
6	chr8:103775757..103778292-chr8:103778774..103781669,2	K562	blood:
7	chr8:103774355..103775966-chr8:103779629..103782231,2	K562	blood:
8	chr8:103751112..103752616-chr8:103777186..103780062,2	MCF-7	breast:
9	chr8:103664561..103669175-chr8:103777642..103782938,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv520922	chr8:103778809-103780586	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv519814	chr8:103778809-103806914	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103772400-103780200	Weak transcription	A549	lung
2	chr8:103774800-103780000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:103775000-103780000	Weak transcription	Brain Anterior Caudate	brain
4	chr8:103776600-103790600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:103777000-103780000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:103777200-103780400	Weak transcription	Osteobl	bone
7	chr8:103777600-103779800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:103777600-103779800	Weak transcription	NHEK	skin
9	chr8:103778600-103779800	Enhancers	Colon Smooth Muscle	Colon
10	chr8:103778600-103781600	Enhancers	Fetal Muscle Leg	muscle
11	chr8:103778800-103780000	Bivalent Enhancer	HepG2	liver
12	chr8:103778800-103782600	Enhancers	Fetal Muscle Trunk	muscle
13	chr8:103778800-103783800	Enhancers	Fetal Thymus	thymus
14	chr8:103779000-103780000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr8:103779000-103782600	Enhancers	Placenta	Placenta
16	chr8:103779000-103783600	Enhancers	Right Atrium	heart
17	chr8:103779000-103783800	Enhancers	Aorta	Aorta
18	chr8:103779200-103780000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:103779200-103780200	Enhancers	Fetal Heart	heart
20	chr8:103779200-103780400	Enhancers	Colonic Mucosa	Colon
21	chr8:103779200-103780600	Enhancers	Rectal Smooth Muscle	rectum
22	chr8:103779200-103781000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr8:103779200-103781200	Enhancers	Fetal Stomach	stomach
24	chr8:103779200-103782600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:103779200-103783000	Enhancers	Left Ventricle	heart
26	chr8:103779200-103783000	Enhancers	Lung	lung
27	chr8:103779200-103783400	Enhancers	Right Ventricle	heart
28	chr8:103779200-103783600	Enhancers	Pancreas	Pancrea
29	chr8:103779200-103783800	Enhancers	HMEC	breast
30	chr8:103779400-103780000	Enhancers	Primary T cells from cord blood	blood
31	chr8:103779400-103780600	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr8:103779400-103781400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:103779400-103781400	Enhancers	Placenta Amnion	Placenta Amnion
34	chr8:103779400-103782800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr8:103779400-103783000	Enhancers	Primary hematopoietic stem cells	blood
36	chr8:103779400-103783600	Enhancers	Adipose Nuclei	Adipose
37	chr8:103779400-103784000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr8:103779600-103779800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:103779600-103779800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr8:103779600-103780200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:103779600-103780200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:103779600-103780600	Enhancers	Duodenum Mucosa	Duodenum
43	chr8:103779600-103780600	Enhancers	Gastric	stomach
44	chr8:103779600-103780600	Enhancers	Thymus	Thymus
45	chr8:103779600-103781000	Enhancers	Fetal Intestine Small	intestine
46	chr8:103779600-103781000	Enhancers	Fetal Lung	lung
47	chr8:103779600-103781000	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr8:103779600-103781200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:103779600-103781200	Enhancers	Esophagus	oesophagus
50	chr8:103779600-103781400	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links