Variant report

Variant	rs1904389
Chromosome Location	chr12:25653864-25653865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12099691	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809069	chr12:25556661-25730319	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2757493	chr12:25649357-25654445	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2759885	chr12:25649357-25654445	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25649600-25654600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr12:25652600-25654800	Enhancers	Hela-S3	cervix
3	chr12:25652800-25657600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:25653200-25654400	Enhancers	HMEC	breast
5	chr12:25653200-25654600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:25653200-25655200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:25653400-25654200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:25653400-25655400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr12:25653400-25655400	Enhancers	Osteobl	bone
10	chr12:25653600-25654000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:25653800-25654200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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