Variant report

Variant	rs190438907
Chromosome Location	chrX:138283074-138283075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:138282334..138284034-chrX:138350999..138353956,2	K562	blood:
2	chrX:138282011..138285172-chrX:138285245..138287356,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129682	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525867	chrX:137580983-138439843	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv533984	chrX:137938683-138556308	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv532935	chrX:138281469-138764448	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138277400-138285200	Weak transcription	Pancreas	Pancrea
2	chrX:138277600-138284000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chrX:138277600-138285400	Weak transcription	Liver	Liver
4	chrX:138277600-138286000	Weak transcription	Right Atrium	heart
5	chrX:138279000-138284800	Weak transcription	Gastric	stomach
6	chrX:138282000-138283400	Enhancers	K562	blood
7	chrX:138282000-138284200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chrX:138282200-138283600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chrX:138282200-138283600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chrX:138282400-138283200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chrX:138282400-138283600	Enhancers	NH-A	brain
12	chrX:138282600-138283200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
13	chrX:138282600-138284800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chrX:138282600-138284800	Weak transcription	Psoas Muscle	Psoas
15	chrX:138282800-138283200	Enhancers	HSMMtube	muscle
16	chrX:138282800-138283400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chrX:138282800-138284400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chrX:138282800-138285000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chrX:138282800-138285400	Weak transcription	Esophagus	oesophagus
20	chrX:138283000-138285000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chrX:138283000-138288600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links