Variant report

Variant	rs190446392
Chromosome Location	chr6:147518489-147518490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147514297..147518572-chr6:147531601..147534869,4	K562	blood:
2	chr6:147495613..147497909-chr6:147518076..147519884,2	K562	blood:
3	chr6:147495348..147497909-chr6:147517177..147519884,2	K562	blood:
4	chr6:147516623..147520758-chr6:147522602..147524809,4	MCF-7	breast:
5	chr6:147426845..147428573-chr6:147517289..147519124,2	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1820434	chr6:147518489-147543262	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147516400-147519000	Enhancers	K562	blood
2	chr6:147516600-147522800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:147516600-147523000	Weak transcription	Osteobl	bone
4	chr6:147516800-147523000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:147516800-147523000	Weak transcription	HUVEC	blood vessel
6	chr6:147517000-147518600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:147517000-147522800	Weak transcription	A549	lung
8	chr6:147517200-147518600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:147517200-147522800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:147517400-147522400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:147517400-147522400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:147517400-147523000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:147517400-147523000	Weak transcription	NHDF-Ad	bronchial
14	chr6:147517600-147523000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:147517800-147522600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:147518000-147522600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:147518000-147522800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:147518000-147523000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:147518400-147518800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:147518400-147519000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:147518400-147519000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links