Variant report

Variant	rs190448728
Chromosome Location	chr7:56183895-56183896
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
5	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
6	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
7	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
8	nsv1034712	chr7:56146885-56605592	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv538861	chr7:56146885-56605592	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
10	nsv526294	chr7:56171489-56622630	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
11	nsv1016771	chr7:56174828-56643856	Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	nsv538862	chr7:56174828-56643856	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv970840	chr7:56183660-56185640	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv970839	chr7:56183660-56196274	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56183400-56184000	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr7:56183400-56184000	Bivalent/Poised TSS	Fetal Stomach	stomach
3	chr7:56183400-56184200	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr7:56183400-56184400	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr7:56183600-56184000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
6	chr7:56183600-56184000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:56183600-56184000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:56183600-56184000	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:56183600-56184000	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
10	chr7:56183600-56184000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
11	chr7:56183600-56184000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
12	chr7:56183600-56184000	Bivalent Enhancer	Fetal Brain Male	brain
13	chr7:56183600-56184000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
14	chr7:56183600-56184000	Bivalent Enhancer	Ovary	ovary
15	chr7:56183600-56184000	Flanking Active TSS	Psoas Muscle	Psoas
16	chr7:56183600-56184000	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr7:56183600-56184000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
18	chr7:56183600-56184000	Flanking Active TSS	HMEC	breast
19	chr7:56183600-56184000	Active TSS	HSMM	muscle
20	chr7:56183600-56184200	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
21	chr7:56183600-56184200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr7:56183600-56184200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:56183600-56184200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:56183600-56184200	Active TSS	Aorta	Aorta
25	chr7:56183600-56184200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
26	chr7:56183600-56184200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
27	chr7:56183600-56184200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
28	chr7:56183600-56184200	Bivalent Enhancer	Left Ventricle	heart
29	chr7:56183600-56184200	Flanking Active TSS	Pancreas	Pancrea
30	chr7:56183600-56184200	Bivalent/Poised TSS	Thymus	Thymus
31	chr7:56183600-56184200	Bivalent/Poised TSS	NHEK	skin
32	chr7:56183600-56184400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:56183600-56184400	Enhancers	Primary B cells from peripheral blood	blood
34	chr7:56183600-56184400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
35	chr7:56183600-56184400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
36	chr7:56183600-56184600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:56183600-56184600	Active TSS	Hela-S3	cervix
38	chr7:56183800-56184000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
39	chr7:56183800-56184000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr7:56183800-56184000	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
41	chr7:56183800-56184000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:56183800-56184000	Active TSS	Esophagus	oesophagus
43	chr7:56183800-56184000	Bivalent/Poised TSS	Right Ventricle	heart
44	chr7:56183800-56184200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
45	chr7:56183800-56184200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
46	chr7:56183800-56184200	Active TSS	Colonic Mucosa	Colon
47	chr7:56183800-56184200	Bivalent/Poised TSS	Fetal Brain Female	brain
48	chr7:56183800-56184200	Active TSS	Fetal Kidney	kidney
49	chr7:56183800-56184200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
50	chr7:56183800-56184200	Bivalent/Poised TSS	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links