Variant report

Variant	rs190470855
Chromosome Location	chrX:5971399-5971400
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869027	chrX:5052974-6043003	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv526949	chrX:5883977-6084630	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949481	chrX:5883977-6401143	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv932174	chrX:5900508-6018691	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv918106	chrX:5970935-6074792	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv533221	chrX:5970948-6352423	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:5959600-5976400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chrX:5960000-6006200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chrX:5960200-5976000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chrX:5968000-5988800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chrX:5968400-5980400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chrX:5970200-5971400	Enhancers	Brain Germinal Matrix	brain
7	chrX:5970200-5976400	Strong transcription	Dnd41	blood
8	chrX:5970400-5972000	Enhancers	Fetal Brain Male	brain
9	chrX:5970400-5972400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chrX:5970800-5971600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chrX:5971000-5971400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chrX:5971000-5971600	Active TSS	Brain Hippocampus Middle	brain
13	chrX:5971200-5971400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chrX:5971200-5971400	Active TSS	Brain Inferior Temporal Lobe	brain
15	chrX:5971200-5971400	Active TSS	Fetal Brain Female	brain
16	chrX:5971200-5971600	Active TSS	Brain Angular Gyrus	brain
17	chrX:5971200-5971600	Active TSS	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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