Variant report

Variant	rs190493781
Chromosome Location	chr6:139904248-139904249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139773028..139775843-chr6:139903683..139906144,2	K562	blood:
2	chr6:139691841..139699576-chr6:139900868..139917289,34	MCF-7	breast:
3	chr6:139904154..139906110-chr6:139909809..139911631,3	K562	blood:
4	chr6:139904227..139905139-chr6:140201272..140201808,2	MCF-7	breast:
5	chr6:139904084..139907083-chr6:139974866..139976418,2	K562	blood:
6	chr6:139902793..139905980-chr6:139905991..139910426,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv970368	chr6:139903788-139911187	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139899000-139907000	Weak transcription	K562	blood
2	chr6:139899600-139908800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:139900000-139904400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:139900000-139907400	Weak transcription	Pancreas	Pancrea
5	chr6:139900000-139908800	Weak transcription	Fetal Lung	lung
6	chr6:139900200-139904600	Weak transcription	Fetal Heart	heart
7	chr6:139900200-139909000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:139900400-139908800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:139900400-139908800	Weak transcription	Fetal Intestine Large	intestine
10	chr6:139900800-139908800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:139900800-139919200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:139902400-139906800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:139902400-139909200	Weak transcription	Right Ventricle	heart
14	chr6:139902600-139906800	Weak transcription	Fetal Kidney	kidney
15	chr6:139902600-139907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:139902600-139908000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:139903200-139906200	Enhancers	Placenta	Placenta
18	chr6:139903400-139904400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:139903600-139905000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:139903800-139904800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:139903800-139905000	Enhancers	NH-A	brain
22	chr6:139903800-139905600	Enhancers	A549	lung
23	chr6:139904000-139904400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:139904000-139904800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:139904000-139905000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:139904000-139905000	Enhancers	NHEK	skin
27	chr6:139904000-139905000	Enhancers	NHLF	lung
28	chr6:139904000-139905000	Enhancers	Osteobl	bone
29	chr6:139904200-139904600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:139904200-139904800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:139904200-139904800	Enhancers	Hela-S3	cervix
32	chr6:139904200-139904800	Enhancers	HSMM	muscle
33	chr6:139904200-139904800	Enhancers	NHDF-Ad	bronchial
34	chr6:139904200-139905000	Enhancers	HMEC	breast
35	chr6:139904200-139905400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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