Variant report

Variant	rs190502286
Chromosome Location	chr9:102369203-102369204
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv522018	chr9:102368541-102386706	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102365800-102369800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:102367200-102369400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr9:102367600-102370000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:102367600-102370400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:102368600-102369600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:102368600-102370400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:102368600-102370600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:102368800-102369600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr9:102368800-102369600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:102368800-102369800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr9:102368800-102370600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr9:102368800-102370600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:102368800-102370800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr9:102369200-102370000	Enhancers	Fetal Brain Male	brain
15	chr9:102369200-102370800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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