Variant report

Variant	rs190511673
Chromosome Location	chr1:166459117-166459118
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166457611..166459186-chr1:166459770..166461312,2	K562	blood:
2	chr1:166458815..166461765-chr1:166845065..166847210,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM78B-2	chr1:166459098-166459276	ENSG00000234142

Variant related genes	Relation type
ENSG00000152382	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv946484	chr1:166458528-166461650	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166458000-166459200	Flanking Active TSS	K562	blood
2	chr1:166458000-166460000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:166458000-166460000	Flanking Active TSS	Dnd41	blood
4	chr1:166458000-166460000	Active TSS	GM12878-XiMat	blood
5	chr1:166458600-166459200	Flanking Active TSS	Primary B cells from peripheral blood	blood
6	chr1:166458600-166459200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
7	chr1:166458600-166459200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr1:166458600-166459200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:166458600-166459800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:166458800-166459200	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr1:166458800-166459200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr1:166458800-166459200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:166458800-166459200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr1:166458800-166459200	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr1:166458800-166459200	Active TSS	Brain Hippocampus Middle	brain
16	chr1:166458800-166459200	Active TSS	Brain Substantia Nigra	brain
17	chr1:166458800-166459200	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr1:166458800-166459200	Flanking Bivalent TSS/Enh	HepG2	liver
19	chr1:166458800-166459600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:166458800-166459600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr1:166458800-166459600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chr1:166458800-166459600	Active TSS	Liver	Liver
23	chr1:166458800-166459600	Active TSS	Fetal Thymus	thymus
24	chr1:166458800-166459600	Active TSS	Psoas Muscle	Psoas
25	chr1:166458800-166459600	Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr1:166458800-166459600	Active TSS	Stomach Smooth Muscle	stomach
27	chr1:166458800-166459600	Active TSS	NHDF-Ad	bronchial
28	chr1:166458800-166459800	Active TSS	Colonic Mucosa	Colon
29	chr1:166458800-166459800	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr1:166458800-166459800	Enhancers	Gastric	stomach
31	chr1:166458800-166459800	Active TSS	Rectal Smooth Muscle	rectum
32	chr1:166458800-166459800	Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr1:166458800-166459800	Active TSS	Thymus	Thymus
34	chr1:166458800-166460000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:166458800-166460000	Enhancers	Fetal Muscle Leg	muscle
36	chr1:166458800-166460000	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr1:166459000-166459200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr1:166459000-166459200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:166459000-166459200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr1:166459000-166459200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr1:166459000-166459400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr1:166459000-166459400	Flanking Active TSS	Hela-S3	cervix
43	chr1:166459000-166459600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:166459000-166459600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr1:166459000-166459600	Active TSS	Primary monocytes fromperipheralblood	blood
46	chr1:166459000-166459600	Active TSS	Primary neutrophils fromperipheralblood	blood
47	chr1:166459000-166459600	Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr1:166459000-166459600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr1:166459000-166459600	Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr1:166459000-166459600	Active TSS	Pancreatic Islets	Pancreatic Islet

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