Variant report

Variant	rs190527249
Chromosome Location	chr6:28759077-28759078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28692257..28693945-chr6:28757387..28759135,2	K562	blood:
2	chr6:28758828..28759555-chr9:136657868..136658790,2	MCF-7	breast:
3	chr6:28757752..28760408-chr6:28765977..28767794,2	K562	blood:
4	chr6:28739775..28742884-chr6:28756307..28759477,3	K562	blood:
5	chr6:28752766..28756379-chr6:28756550..28759154,4	K562	blood:
6	chr6:28756425..28760621-chr6:28761088..28764506,5	K562	blood:
7	chr6:28686813..28689115-chr6:28758010..28760174,2	K562	blood:
8	chr6:28756573..28759569-chr6:28769791..28772080,4	K562	blood:
9	chr6:28695047..28697144-chr6:28756622..28759292,2	K562	blood:
10	chr6:28725484..28727930-chr6:28757614..28759136,2	K562	blood:
11	chr6:28734776..28737188-chr6:28758091..28759724,2	K562	blood:
12	chr6:28755863..28759570-chr6:28911484..28914475,3	K562	blood:
13	chr6:28743173..28744938-chr6:28758816..28760398,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265764	Chromatin interaction
ENSG00000204709	Chromatin interaction
ENSG00000221191	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28756400-28759200	Active TSS	A549	lung
2	chr6:28756800-28759200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:28757400-28759200	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:28757600-28759200	Active TSS	Hela-S3	cervix
5	chr6:28758200-28761600	Weak transcription	HMEC	breast
6	chr6:28758400-28761600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:28758400-28761800	Weak transcription	HSMMtube	muscle
8	chr6:28758600-28759200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:28758600-28759600	Flanking Active TSS	HepG2	liver
10	chr6:28758800-28759200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:28758800-28759200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:28758800-28759200	Enhancers	NHEK	skin
13	chr6:28758800-28761800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:28758800-28761800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:28759000-28759200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr6:28759000-28759200	Flanking Active TSS	Placenta	Placenta
17	chr6:28759000-28759200	Enhancers	GM12878-XiMat	blood
18	chr6:28759000-28759400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr6:28759000-28759400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:28759000-28759400	Enhancers	Osteobl	bone
21	chr6:28759000-28759600	Flanking Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links