Variant report

Variant	rs190534305
Chromosome Location	chr4:26778786-26778787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26778248..26781151-chr4:26791403..26794152,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1005550	chr4:26778410-26824285	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:26748000-26780200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:26748200-26789000	Weak transcription	Gastric	stomach
6	chr4:26749400-26781000	Weak transcription	NHDF-Ad	bronchial
7	chr4:26749800-26789200	Weak transcription	Fetal Kidney	kidney
8	chr4:26750600-26780000	Weak transcription	HMEC	breast
9	chr4:26750600-26781000	Weak transcription	Lung	lung
10	chr4:26752200-26780200	Weak transcription	NHEK	skin
11	chr4:26752800-26780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:26754400-26781800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr4:26755600-26788600	Weak transcription	NHLF	lung
14	chr4:26757600-26789000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:26761400-26788800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:26768000-26789200	Weak transcription	HSMMtube	muscle
17	chr4:26771400-26789400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:26774200-26789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:26774400-26783800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:26774400-26787600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:26774400-26789200	Weak transcription	Pancreas	Pancrea
22	chr4:26774800-26781000	Weak transcription	Primary T cells from cord blood	blood
23	chr4:26775800-26778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:26775800-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:26775800-26780800	Weak transcription	Fetal Stomach	stomach
26	chr4:26775800-26781000	Weak transcription	Left Ventricle	heart
27	chr4:26775800-26782000	Weak transcription	Thymus	Thymus
28	chr4:26776000-26778800	Weak transcription	Fetal Intestine Small	intestine
29	chr4:26776000-26780600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:26776000-26780800	Weak transcription	Right Ventricle	heart
31	chr4:26776000-26783600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:26776000-26783800	Weak transcription	Ovary	ovary
33	chr4:26776000-26789000	Weak transcription	Fetal Thymus	thymus
34	chr4:26776000-26789000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:26776000-26789400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr4:26776000-26789600	Weak transcription	Colon Smooth Muscle	Colon
37	chr4:26776000-26790000	Weak transcription	Brain Germinal Matrix	brain
38	chr4:26776200-26779800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr4:26776200-26780800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:26776200-26781000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:26776200-26781000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:26776200-26781800	Weak transcription	Primary B cells from cord blood	blood
43	chr4:26776200-26783800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:26776200-26785200	Weak transcription	Dnd41	blood
45	chr4:26776200-26789200	Weak transcription	Fetal Lung	lung
46	chr4:26776200-26789400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:26776200-26789400	Weak transcription	Fetal Intestine Large	intestine
48	chr4:26776200-26789400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr4:26776400-26780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:26776400-26782000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links