Variant report

Variant	rs190534753
Chromosome Location	chr5:108023647-108023648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108021801..108024411-chr5:108062186..108064628,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272523	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1024076	chr5:107991426-108028223	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv980959	chr5:108023194-108043010	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108007000-108034800	Weak transcription	Right Atrium	heart
2	chr5:108021000-108024000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr5:108021200-108024400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:108021200-108024600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:108021400-108024000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:108021400-108024200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:108021600-108024000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:108021800-108024000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:108021800-108024000	Enhancers	Fetal Brain Male	brain
10	chr5:108021800-108024200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:108022000-108024200	Enhancers	Brain Angular Gyrus	brain
12	chr5:108022000-108024400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:108022200-108023800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:108022200-108023800	Enhancers	Brain Anterior Caudate	brain
15	chr5:108022200-108024000	Enhancers	Brain Hippocampus Middle	brain
16	chr5:108022200-108024200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:108022400-108023800	Enhancers	Brain Germinal Matrix	brain
18	chr5:108022400-108024200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:108022400-108024400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr5:108022600-108023800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr5:108022600-108024400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr5:108022600-108024600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr5:108022800-108024400	Enhancers	Fetal Thymus	thymus
24	chr5:108023000-108024200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr5:108023000-108024400	Enhancers	GM12878-XiMat	blood
26	chr5:108023200-108023800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:108023600-108023800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:108023600-108023800	Enhancers	Primary B cells from peripheral blood	blood
29	chr5:108023600-108023800	Enhancers	Osteobl	bone
30	chr5:108023600-108024000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:108023600-108024000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:108023600-108024000	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr5:108023600-108024000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr5:108023600-108024000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:108023600-108024000	Enhancers	Thymus	Thymus

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