Variant report

Variant	rs190539678
Chromosome Location	chr5:107339117-107339118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107332693..107334247-chr5:107337068..107339147,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv327830	chr5:107337906-107340794	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
3	chr5:107338400-107339400	Flanking Active TSS	Dnd41	blood
4	chr5:107338400-107339600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:107338600-107339200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:107338600-107339200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:107338600-107339200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr5:107338600-107339200	Flanking Active TSS	HUVEC	blood vessel
9	chr5:107338600-107339400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:107338600-107339800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr5:107338800-107339200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:107338800-107339200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:107338800-107339200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:107338800-107339200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr5:107338800-107339200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:107338800-107339200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:107338800-107339200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:107338800-107339200	Active TSS	Duodenum Mucosa	Duodenum
19	chr5:107338800-107339200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr5:107338800-107339200	Enhancers	Left Ventricle	heart
21	chr5:107338800-107339200	Active TSS	Ovary	ovary
22	chr5:107338800-107339200	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr5:107338800-107339200	Active TSS	Right Atrium	heart
24	chr5:107338800-107339200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr5:107338800-107339200	Enhancers	Small Intestine	intestine
26	chr5:107338800-107339200	Flanking Active TSS	Hela-S3	cervix
27	chr5:107338800-107339200	Active TSS	HSMMtube	muscle
28	chr5:107338800-107339200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr5:107338800-107339200	Active TSS	NHLF	lung
30	chr5:107338800-107339400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:107338800-107339400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:107338800-107339400	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr5:107338800-107339400	Active TSS	Fetal Lung	lung
34	chr5:107338800-107339400	Flanking Active TSS	GM12878-XiMat	blood
35	chr5:107338800-107339400	Active TSS	NHDF-Ad	bronchial
36	chr5:107338800-107339600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr5:107338800-107339600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr5:107338800-107339600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr5:107339000-107339200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:107339000-107339200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr5:107339000-107339200	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr5:107339000-107339200	Enhancers	Liver	Liver
43	chr5:107339000-107339200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr5:107339000-107339200	Enhancers	Fetal Heart	heart
45	chr5:107339000-107339400	Flanking Active TSS	Primary T cells from cord blood	blood
46	chr5:107339000-107339400	Enhancers	Primary hematopoietic stem cells	blood
47	chr5:107339000-107339400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr5:107339000-107339400	Active TSS	Brain Anterior Caudate	brain
49	chr5:107339000-107339400	Active TSS	Colon Smooth Muscle	Colon
50	chr5:107339000-107339400	Flanking Active TSS	Osteobl	bone

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