Variant report

Variant	rs190552261
Chromosome Location	chr2:114042339-114042340
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114033208..114035776-chr2:114039656..114042402,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508162	chr2:113983043-114099966	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv874901	chr2:114022569-114079565	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv998204	chr2:114023917-114075446	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv961872	chr2:114041837-114061641	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114036600-114043800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:114037400-114043600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:114037600-114043800	Enhancers	HMEC	breast
4	chr2:114038200-114043800	Enhancers	Fetal Intestine Large	intestine
5	chr2:114038400-114043600	Enhancers	Fetal Intestine Small	intestine
6	chr2:114038600-114043600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:114038600-114043800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:114039000-114043800	Enhancers	HSMM	muscle
9	chr2:114039400-114043000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:114039400-114043200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:114039400-114043200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr2:114039600-114042400	Enhancers	Adipose Nuclei	Adipose
13	chr2:114039600-114042600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr2:114039600-114043400	Enhancers	Osteobl	bone
15	chr2:114039600-114043600	Enhancers	HSMMtube	muscle
16	chr2:114039600-114043800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:114039800-114043600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:114040000-114042600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:114040200-114042600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr2:114040400-114042400	Enhancers	Fetal Muscle Leg	muscle
21	chr2:114040400-114042400	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr2:114040400-114042400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr2:114040400-114042800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr2:114040600-114043600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:114040600-114043600	Enhancers	Colon Smooth Muscle	Colon
26	chr2:114040600-114043600	Enhancers	NHDF-Ad	bronchial
27	chr2:114040600-114047000	Enhancers	Liver	Liver
28	chr2:114040600-114047800	Weak transcription	Gastric	stomach
29	chr2:114040800-114042400	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr2:114040800-114042400	Enhancers	Duodenum Mucosa	Duodenum
31	chr2:114040800-114042400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr2:114040800-114042400	Enhancers	Hela-S3	cervix
33	chr2:114040800-114043400	Enhancers	NHLF	lung
34	chr2:114041000-114042600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr2:114041000-114043600	Enhancers	Rectal Smooth Muscle	rectum
36	chr2:114041200-114042400	Enhancers	Brain Substantia Nigra	brain
37	chr2:114041200-114042800	Enhancers	Fetal Stomach	stomach
38	chr2:114041200-114043600	Enhancers	NHEK	skin
39	chr2:114041400-114042400	Enhancers	Brain Cingulate Gyrus	brain
40	chr2:114041400-114042400	Enhancers	Brain Hippocampus Middle	brain
41	chr2:114041400-114042400	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr2:114041400-114042600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr2:114041400-114042800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr2:114041400-114043800	Enhancers	A549	lung
45	chr2:114041600-114042600	Enhancers	Spleen	Spleen
46	chr2:114041600-114042600	Enhancers	HepG2	liver
47	chr2:114041600-114043400	Enhancers	Lung	lung
48	chr2:114041600-114043600	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr2:114041800-114042400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
50	chr2:114041800-114042600	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links