Variant report

Variant	rs1905931
Chromosome Location	chr4:172817274-172817275
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10008764	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10026829	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10031590	0.86[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11932916	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs13101636	0.90[JPT][hapmap];0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1385788	0.83[ASN][1000 genomes]
rs17057538	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1905930	0.96[CEU][hapmap];0.94[JPT][hapmap]
rs4124044	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs4692906	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6553597	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs6553598	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs720724	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs720725	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs7655374	0.90[JPT][hapmap]
rs7675045	0.96[CEU][hapmap];0.95[JPT][hapmap]
rs7682300	0.86[CEU][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7692888	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7693106	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7696529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9760922	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv881602	chr4:172772005-172867912	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv596197	chr4:172797761-172868945	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv520744	chr4:172797761-172897603	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1029351	chr4:172809594-172893072	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172816400-172817600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:172817000-172818000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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