Variant report

Variant	rs190605041
Chromosome Location	chr11:32609798-32609799
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32455462..32457058-chr11:32608687..32611459,2	K562	blood:
2	chr11:32440943..32443516-chr11:32607260..32609866,2	K562	blood:
3	chr11:32455134..32460391-chr11:32603988..32611641,10	K562	blood:
4	chr11:32605376..32607127-chr11:32609129..32611535,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183242	Chromatin interaction
ENSG00000149100	Chromatin interaction
ENSG00000184937	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3459064	chr11:32608637-32610226	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3459075	chr11:32608689-32610140	Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32606800-32610000	Weak transcription	Placenta	Placenta
2	chr11:32606800-32610200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:32606800-32610200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:32606800-32610200	Weak transcription	Lung	lung
5	chr11:32606800-32610400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:32606800-32611000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:32606800-32611400	Weak transcription	Esophagus	oesophagus
8	chr11:32606800-32611400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:32606800-32611400	Weak transcription	Stomach Mucosa	stomach
10	chr11:32606800-32613400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:32606800-32613400	Weak transcription	Aorta	Aorta
12	chr11:32606800-32616000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:32607000-32609800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:32607000-32610000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:32607000-32610000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr11:32607000-32610200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:32607000-32610200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr11:32607000-32610200	Weak transcription	HSMMtube	muscle
19	chr11:32607000-32610400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:32607000-32610400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:32607000-32611400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:32607000-32617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:32607200-32609800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:32607200-32610000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:32607200-32610000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:32607200-32610000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:32607200-32610000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:32607200-32610200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:32607200-32610200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr11:32607200-32610200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr11:32607200-32610200	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr11:32607200-32610200	Weak transcription	Fetal Brain Female	brain
33	chr11:32607200-32610200	Weak transcription	Fetal Lung	lung
34	chr11:32607200-32610200	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:32607200-32610200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:32607200-32610200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:32607200-32610200	Weak transcription	Thymus	Thymus
38	chr11:32607200-32610400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:32607200-32610800	Weak transcription	Brain Substantia Nigra	brain
40	chr11:32607200-32612000	Weak transcription	Brain Angular Gyrus	brain
41	chr11:32607400-32609800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:32607400-32610000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:32607400-32610000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:32607400-32610000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr11:32607400-32610000	Weak transcription	NHLF	lung
46	chr11:32607400-32610000	Weak transcription	Osteobl	bone
47	chr11:32607400-32610400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:32607400-32610600	Weak transcription	Primary B cells from cord blood	blood
49	chr11:32607600-32610200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr11:32607600-32610200	Weak transcription	Brain Germinal Matrix	brain

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