Variant report

Variant	rs190641269
Chromosome Location	chr13:30964655-30964656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30963591..30965165-chr13:30969250..30971365,2	MCF-7	breast:
2	chr13:30944939..30947830-chr13:30963625..30965440,2	K562	blood:
3	chr13:30962704..30965120-chr13:30966548..30968829,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238121	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3370243	chr13:30964652-30968050	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30951400-30969400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:30963400-30966400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr13:30963600-30965800	Weak transcription	Fetal Brain Male	brain
4	chr13:30963800-30965200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:30963800-30965400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr13:30963800-30966600	Weak transcription	Fetal Brain Female	brain
7	chr13:30963800-30966800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:30963800-30968200	Weak transcription	Primary B cells from cord blood	blood
9	chr13:30963800-30968400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr13:30963800-30968600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr13:30963800-30968800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr13:30964000-30964800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr13:30964000-30968600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr13:30964000-30968800	Enhancers	Fetal Thymus	thymus
15	chr13:30964000-30968800	Enhancers	Thymus	Thymus
16	chr13:30964000-30969000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr13:30964000-30969000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr13:30964000-30969400	Weak transcription	Spleen	Spleen
19	chr13:30964200-30964800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr13:30964200-30966800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:30964200-30968000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr13:30964200-30968400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr13:30964200-30968400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr13:30964200-30968400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr13:30964200-30968400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr13:30964200-30968400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr13:30964200-30968400	Weak transcription	Fetal Intestine Large	intestine
28	chr13:30964200-30968400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr13:30964200-30968600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr13:30964200-30968600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr13:30964200-30968600	Weak transcription	HMEC	breast
32	chr13:30964200-30968800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:30964200-30968800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr13:30964200-30968800	Weak transcription	Adipose Nuclei	Adipose
35	chr13:30964200-30968800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr13:30964400-30964800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr13:30964400-30964800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr13:30964400-30965200	Enhancers	Dnd41	blood
39	chr13:30964400-30965800	Weak transcription	Primary T cells from cord blood	blood
40	chr13:30964400-30966000	Weak transcription	HepG2	liver
41	chr13:30964400-30966400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:30964400-30966400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr13:30964400-30966400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr13:30964400-30966400	Weak transcription	Liver	Liver
45	chr13:30964400-30966600	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr13:30964400-30967000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr13:30964400-30967200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr13:30964400-30967800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr13:30964400-30968400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr13:30964400-30968400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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