Variant report

Variant	rs190671259
Chromosome Location	chr6:144384852-144384853
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144384139..144386162-chr6:144415974..144418368,2	MCF-7	breast:
2	chr6:144382541..144385412-chr6:144408158..144411278,3	K562	blood:
3	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
4	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
5	chr6:143882307..143884065-chr6:144383379..144386197,2	K562	blood:
6	chr6:144383030..144384886-chr6:144536136..144538729,2	K562	blood:

Variant related genes	Relation type
ENSG00000235740	Chromatin interaction
ENSG00000169976	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358461	chr6:144384284-144386832	Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144383600-144387000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:144383800-144385000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr6:144383800-144385000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:144383800-144385000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:144383800-144385200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr6:144384000-144385000	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr6:144384200-144385000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
8	chr6:144384200-144385000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr6:144384200-144385000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr6:144384200-144385000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr6:144384200-144385000	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr6:144384200-144385000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
13	chr6:144384200-144385000	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr6:144384200-144385000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
15	chr6:144384200-144385200	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr6:144384200-144385200	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr6:144384200-144385200	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr6:144384200-144386000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr6:144384200-144386000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:144384200-144386200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
21	chr6:144384200-144386200	Active TSS	Rectal Smooth Muscle	rectum
22	chr6:144384200-144386200	Bivalent/Poised TSS	NHDF-Ad	bronchial
23	chr6:144384400-144385000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:144384400-144385000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:144384400-144385000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:144384400-144385000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:144384400-144385000	Flanking Active TSS	Liver	Liver
28	chr6:144384400-144385000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
29	chr6:144384400-144385000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
30	chr6:144384400-144385000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
31	chr6:144384400-144385000	Flanking Active TSS	Pancreas	Pancrea
32	chr6:144384400-144385000	Flanking Bivalent TSS/Enh	HepG2	liver
33	chr6:144384400-144385200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:144384400-144385600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:144384400-144386000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
36	chr6:144384400-144386200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:144384400-144386200	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr6:144384400-144386400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:144384600-144385000	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:144384600-144385000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:144384600-144385000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:144384600-144385000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:144384600-144385000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
44	chr6:144384600-144385000	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
45	chr6:144384600-144385000	Flanking Bivalent TSS/Enh	Fetal Lung	lung
46	chr6:144384600-144385000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
47	chr6:144384600-144385000	Flanking Active TSS	Lung	lung
48	chr6:144384600-144385000	Flanking Active TSS	Placenta Amnion	Placenta Amnion
49	chr6:144384600-144385000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
50	chr6:144384600-144385000	Flanking Bivalent TSS/Enh	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links