Variant report

Variant	rs190686528
Chromosome Location	chr7:126890899-126890900
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126884896..126891192-chr7:126891657..126895737,6	K562	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv464712	chr7:126881029-126908258	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv608380	chr7:126881029-126908258	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv819682	chr7:126890804-126895155	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126890200-126891000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
2	chr7:126890200-126894400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:126890600-126891000	Enhancers	Liver	Liver
4	chr7:126890600-126891000	Active TSS	Brain Cingulate Gyrus	brain
5	chr7:126890600-126891800	Bivalent Enhancer	GM12878-XiMat	blood
6	chr7:126890600-126892000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:126890600-126892000	Active TSS	Brain Anterior Caudate	brain
8	chr7:126890600-126892400	Active TSS	Brain Substantia Nigra	brain
9	chr7:126890600-126894400	Active TSS	Brain Angular Gyrus	brain
10	chr7:126890800-126891000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr7:126890800-126891000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
12	chr7:126890800-126891000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr7:126890800-126891000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr7:126890800-126891000	Active TSS	Brain Hippocampus Middle	brain
15	chr7:126890800-126891000	Bivalent/Poised TSS	Fetal Brain Female	brain
16	chr7:126890800-126891000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
17	chr7:126890800-126891200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
18	chr7:126890800-126891200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:126890800-126891400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
21	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:126890800-126891400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
24	chr7:126890800-126891400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
25	chr7:126890800-126891400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
26	chr7:126890800-126891600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
27	chr7:126890800-126891800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
28	chr7:126890800-126892400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
29	chr7:126890800-126894400	Active TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links