Variant report

Variant	rs190690178
Chromosome Location	chr10:90932029-90932030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv551845	chr10:90919135-90964026	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv517170	chr10:90931602-90975207	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90931200-90933000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr10:90931200-90933200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:90931200-90933200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:90931200-90933200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:90931200-90933400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:90931400-90932200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:90931400-90933200	Enhancers	HMEC	breast
8	chr10:90931600-90932800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:90931600-90932800	Enhancers	NHLF	lung
10	chr10:90931600-90933000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:90931600-90933000	Enhancers	NHEK	skin
12	chr10:90931800-90932200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:90931800-90932400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:90931800-90932400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:90931800-90933000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:90931800-90933800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:90932000-90932400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:90932000-90932400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:90932000-90932400	Flanking Active TSS	NHDF-Ad	bronchial
20	chr10:90932000-90932400	Flanking Active TSS	Osteobl	bone
21	chr10:90932000-90932800	Enhancers	HSMMtube	muscle
22	chr10:90932000-90933000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:90932000-90933200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:90932000-90933400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:90932000-90933400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links