Variant report

Variant	rs190787303
Chromosome Location	chr22:34271701-34271702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr22:34271580-34271730	GM12873	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr22:34269817..34272444-chr22:34314882..34316654,2	MCF-7	breast:
2	chr22:34270457..34273179-chr22:34316799..34318425,2	MCF-7	breast:
3	chr22:34270428..34272649-chr22:34273804..34275941,2	MCF-7	breast:
4	chr22:34265653..34267240-chr22:34270322..34272194,2	MCF-7	breast:

Variant related genes	Relation type
LARGE	TF binding region
ENSG00000133424	Chromatin interaction
ENSG00000273082	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv2763261	chr22:33831348-34288389	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv914990	chr22:34090440-34373293	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv914991	chr22:34106384-34293516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1056553	chr22:34116979-34286191	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv914992	chr22:34135007-34283144	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1061736	chr22:34178034-34394918	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv544689	chr22:34178034-34394918	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1066419	chr22:34231732-34553006	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv544690	chr22:34231732-34553006	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv3343210	chr22:34236744-34404210	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv588938	chr22:34270568-34307875	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:34264800-34279400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr22:34268000-34272600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr22:34269000-34271800	Enhancers	HSMMtube	muscle
4	chr22:34269000-34272000	Enhancers	Colon Smooth Muscle	Colon
5	chr22:34269000-34272000	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr22:34269000-34272200	Enhancers	Fetal Lung	lung
7	chr22:34269000-34272200	Enhancers	Fetal Muscle Leg	muscle
8	chr22:34269000-34272400	Enhancers	Right Ventricle	heart
9	chr22:34269000-34273200	Enhancers	Brain Hippocampus Middle	brain
10	chr22:34269000-34273600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr22:34269200-34272200	Enhancers	Brain Anterior Caudate	brain
12	chr22:34269200-34272400	Enhancers	Fetal Brain Male	brain
13	chr22:34269200-34272600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr22:34269200-34272600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr22:34269200-34273000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr22:34269200-34273200	Enhancers	Brain Angular Gyrus	brain
17	chr22:34269200-34273800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr22:34269400-34272400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr22:34269400-34272400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr22:34269400-34272600	Enhancers	Psoas Muscle	Psoas
21	chr22:34269400-34273400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr22:34269600-34271800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr22:34269600-34273600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr22:34269800-34272200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr22:34269800-34275400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr22:34269800-34279600	Weak transcription	Esophagus	oesophagus
27	chr22:34270000-34279000	Weak transcription	Pancreas	Pancrea
28	chr22:34270000-34279000	Weak transcription	GM12878-XiMat	blood
29	chr22:34270200-34272200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr22:34270200-34273400	Enhancers	Fetal Heart	heart
31	chr22:34270200-34278800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr22:34270200-34285600	Weak transcription	Aorta	Aorta
33	chr22:34270400-34271800	Enhancers	Liver	Liver
34	chr22:34270400-34278400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr22:34270600-34272800	Enhancers	H9 Cell Line	embryonic stem cell
36	chr22:34270800-34271800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr22:34270800-34272400	Enhancers	Fetal Stomach	stomach
38	chr22:34271000-34272000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr22:34271000-34272000	Enhancers	Fetal Muscle Trunk	muscle
40	chr22:34271000-34272000	Enhancers	Ovary	ovary
41	chr22:34271000-34272200	Enhancers	Right Atrium	heart
42	chr22:34271000-34272400	Enhancers	Left Ventricle	heart
43	chr22:34271000-34273200	Enhancers	Brain Cingulate Gyrus	brain
44	chr22:34271000-34279400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr22:34271200-34271800	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr22:34271200-34271800	Enhancers	Gastric	stomach
47	chr22:34271200-34271800	Enhancers	HSMM	muscle
48	chr22:34271200-34272200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr22:34271200-34272200	Enhancers	Spleen	Spleen
50	chr22:34271200-34272400	Enhancers	Fetal Brain Female	brain

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