Variant report

Variant	rs1907964
Chromosome Location	chr9:72513281-72513282
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72512582..72514126-chr9:72872792..72874503,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268364	Chromatin interaction
ENSG00000198887	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1493052	1.00[EUR][1000 genomes]
rs41282439	1.00[EUR][1000 genomes]
rs57414959	1.00[EUR][1000 genomes]
rs59696814	1.00[EUR][1000 genomes]
rs7048310	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893439	chr9:72500956-72568962	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72509800-72514000	Weak transcription	Brain Anterior Caudate	brain
2	chr9:72510200-72513400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:72511800-72514600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:72512000-72515800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:72512400-72513400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:72512400-72514000	Enhancers	HUVEC	blood vessel
7	chr9:72512400-72515600	Enhancers	A549	lung
8	chr9:72512400-72515800	Enhancers	Osteobl	bone
9	chr9:72512400-72516000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:72512600-72514000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr9:72512600-72515200	Enhancers	Brain Cingulate Gyrus	brain
12	chr9:72512600-72515400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:72512600-72515400	Enhancers	Brain Hippocampus Middle	brain
14	chr9:72512600-72515600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr9:72512600-72515600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:72512600-72515600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:72512600-72515600	Enhancers	Hela-S3	cervix
18	chr9:72512600-72515800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:72512600-72515800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr9:72512600-72515800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:72512600-72515800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:72512600-72515800	Enhancers	HMEC	breast
23	chr9:72512600-72515800	Enhancers	NHDF-Ad	bronchial
24	chr9:72512600-72515800	Enhancers	NHEK	skin
25	chr9:72512800-72513400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr9:72512800-72513400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr9:72512800-72515600	Enhancers	Brain Substantia Nigra	brain
28	chr9:72512800-72515600	Enhancers	HSMMtube	muscle
29	chr9:72512800-72515800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:72512800-72515800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:72512800-72515800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:72512800-72515800	Enhancers	HSMM	muscle
33	chr9:72512800-72515800	Enhancers	NH-A	brain
34	chr9:72512800-72515800	Enhancers	NHLF	lung
35	chr9:72513000-72514000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr9:72513000-72514400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:72513000-72514800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr9:72513000-72515200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:72513000-72515600	Enhancers	Brain Angular Gyrus	brain
40	chr9:72513000-72515800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:72513000-72515800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:72513200-72515200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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