Variant report

Variant	rs190799711
Chromosome Location	chrX:76802164-76802165
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:76800591..76802545-chrX:76807334..76809410,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531129	chrX:76703995-77038914	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv529412	chrX:76711812-76957972	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3382160	chrX:76731246-76970544	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3368873	chrX:76731246-77122844	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv3367037	chrX:76731346-77001644	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv3431028	chrX:76731396-76822344	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
7	esv3441714	chrX:76731546-76806744	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
8	esv3399586	chrX:76799846-77022144	Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:76756600-76845600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chrX:76766400-76833600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrX:76766600-76803800	Weak transcription	Aorta	Aorta
4	chrX:76766800-76834000	Weak transcription	Thymus	Thymus
5	chrX:76767000-76869800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chrX:76769200-76821800	Weak transcription	Fetal Intestine Small	intestine
7	chrX:76775400-76820200	Weak transcription	Primary T cells from cord blood	blood
8	chrX:76776800-76812800	Weak transcription	Fetal Intestine Large	intestine
9	chrX:76777200-76852000	Weak transcription	HSMM	muscle
10	chrX:76778800-76811400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chrX:76778800-76812000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chrX:76778800-76812000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chrX:76778800-76812600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chrX:76778800-76818200	Weak transcription	Primary hematopoietic stem cells	blood
15	chrX:76778800-76833400	Weak transcription	Duodenum Mucosa	Duodenum
16	chrX:76779000-76812200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chrX:76779200-76820000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chrX:76783400-76851000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chrX:76783800-76819400	Weak transcription	Fetal Stomach	stomach
20	chrX:76784000-76803000	Weak transcription	Left Ventricle	heart
21	chrX:76784000-76821800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chrX:76787000-76812200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chrX:76791000-76802600	Weak transcription	Fetal Heart	heart
24	chrX:76791400-76812200	Weak transcription	Fetal Kidney	kidney
25	chrX:76791800-76803400	Weak transcription	Brain Cingulate Gyrus	brain
26	chrX:76793000-76833600	Weak transcription	Fetal Thymus	thymus
27	chrX:76797400-76811400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chrX:76798800-76808200	Weak transcription	Primary B cells from peripheral blood	blood
29	chrX:76799200-76851000	Weak transcription	Rectal Smooth Muscle	rectum
30	chrX:76799400-76818000	Weak transcription	Fetal Lung	lung
31	chrX:76800000-76810200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chrX:76800400-76802400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chrX:76800400-76812200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chrX:76800600-76802600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chrX:76800600-76803600	Weak transcription	Adipose Nuclei	Adipose
36	chrX:76800800-76802200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chrX:76801000-76810400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chrX:76801000-76810400	Weak transcription	Brain Angular Gyrus	brain
39	chrX:76801000-76812000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chrX:76801200-76802200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chrX:76801200-76803000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chrX:76801400-76802400	Strong transcription	Dnd41	blood
43	chrX:76801600-76802400	Strong transcription	Primary B cells from cord blood	blood
44	chrX:76801600-76810200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chrX:76801800-76802400	Strong transcription	Hela-S3	cervix
46	chrX:76801800-76802600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chrX:76801800-76802800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
48	chrX:76801800-76820200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chrX:76802000-76804800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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