Variant report

Variant	rs1908185
Chromosome Location	chr12:63217245-63217246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10506448	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10506449	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10506450	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10877914	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877917	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10877918	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10877919	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877920	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174655	0.83[AFR][1000 genomes]
rs11174656	0.86[ASN][1000 genomes]
rs11174657	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174658	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174659	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174660	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174661	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174662	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174663	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174664	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174665	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174666	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174667	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174668	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174669	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174678	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174681	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174682	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174684	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174685	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11174689	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11495591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615499	0.86[ASN][1000 genomes]
rs12367672	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12369052	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12371724	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17120377	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17735307	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs337516	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs337517	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3912983	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4378444	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132872	0.83[AFR][1000 genomes]
rs73130065	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs73130066	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73130069	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73130081	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73130084	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73130086	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73130088	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73130089	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73135674	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73135684	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401870	chr12:63215053-63228223	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63195800-63228600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:63196000-63225800	Weak transcription	Gastric	stomach
3	chr12:63207200-63221000	Weak transcription	HepG2	liver
4	chr12:63207200-63228600	Weak transcription	A549	lung
5	chr12:63207200-63231200	Weak transcription	Pancreas	Pancrea
6	chr12:63207400-63219400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:63211800-63228000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:63211800-63228200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:63211800-63228200	Weak transcription	Aorta	Aorta
10	chr12:63212000-63225600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:63212000-63228200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr12:63212200-63222800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:63212200-63223200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:63212200-63227800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr12:63212400-63224400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:63212400-63224600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr12:63212400-63228200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr12:63212400-63228200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr12:63212400-63228400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr12:63212400-63228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:63212400-63228800	Weak transcription	Brain Anterior Caudate	brain
22	chr12:63212400-63229000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr12:63212600-63221200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr12:63212600-63221600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr12:63212600-63221600	Weak transcription	Brain Angular Gyrus	brain
26	chr12:63212600-63227200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr12:63212600-63234600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr12:63212800-63222000	Weak transcription	Left Ventricle	heart
29	chr12:63213800-63225200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr12:63214000-63228400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr12:63214400-63224400	Weak transcription	Fetal Intestine Small	intestine
32	chr12:63214800-63227800	Weak transcription	Brain Substantia Nigra	brain

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