Variant report

Variant	rs1908200
Chromosome Location	chr15:57881395-57881396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr15:57881146-57881643	HepG2	liver:	n/a	chr15:57881208-57881217 chr15:57881207-57881217 chr15:57881614-57881621 chr15:57881613-57881621 chr15:57881209-57881216 chr15:57881612-57881621 chr15:57881206-57881217 chr15:57881208-57881216
2	FOS	chr15:57881039-57881630	HUVEC	blood vessel:	n/a	chr15:57881208-57881217 chr15:57881207-57881217 chr15:57881206-57881217 chr15:57881614-57881621 chr15:57881613-57881621 chr15:57881209-57881216 chr15:57881612-57881621 chr15:57881208-57881216
3	STAT3	chr15:57881319-57881416	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:57879584..57881903-chr15:57881980..57884113,2	K562	blood:
2	chr15:57874663..57876925-chr15:57880839..57882724,3	K562	blood:
3	chr15:57879759..57882719-chr15:57883434..57886045,2	K562	blood:

Variant related genes	Relation type
GCOM1	TF binding region
MYZAP	TF binding region
POLR2M	TF binding region
ENSG00000255529	Chromatin interaction
ENSG00000137878	Chromatin interaction
ENSG00000263155	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55822645	0.94[AFR][1000 genomes]
rs57780160	0.94[AFR][1000 genomes]
rs57874684	0.94[AFR][1000 genomes]
rs58478264	0.94[AFR][1000 genomes]
rs59012941	0.94[AFR][1000 genomes]
rs59081770	1.00[AFR][1000 genomes]
rs7171850	0.89[AFR][1000 genomes]
rs74016316	1.00[AFR][1000 genomes]
rs74016317	1.00[AFR][1000 genomes]
rs74016318	0.94[AFR][1000 genomes]
rs74016329	0.94[AFR][1000 genomes]
rs74016336	0.89[AFR][1000 genomes]
rs74016354	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57874600-57882000	Weak transcription	Pancreas	Pancrea
2	chr15:57877400-57883600	Enhancers	Primary B cells from peripheral blood	blood
3	chr15:57877600-57882400	Enhancers	Primary B cells from cord blood	blood
4	chr15:57878000-57881800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr15:57878400-57883600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr15:57878600-57881600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:57878600-57883400	Enhancers	Adipose Nuclei	Adipose
8	chr15:57878800-57881600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:57878800-57882200	Weak transcription	Gastric	stomach
10	chr15:57878800-57883400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr15:57879000-57881800	Weak transcription	Fetal Intestine Small	intestine
12	chr15:57879000-57882200	Enhancers	NHEK	skin
13	chr15:57879600-57883600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:57879800-57883600	Enhancers	Stomach Mucosa	stomach
15	chr15:57880000-57881800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr15:57880000-57883400	Weak transcription	HUVEC	blood vessel
17	chr15:57880400-57881600	Enhancers	HMEC	breast
18	chr15:57880400-57881800	Weak transcription	Psoas Muscle	Psoas
19	chr15:57880400-57881800	Weak transcription	Right Ventricle	heart
20	chr15:57880400-57882000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:57880400-57882000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr15:57880400-57882000	Weak transcription	Esophagus	oesophagus
23	chr15:57880400-57882200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:57880400-57883200	Weak transcription	Spleen	Spleen
25	chr15:57880600-57881600	Enhancers	Brain Substantia Nigra	brain
26	chr15:57880600-57883400	Enhancers	Fetal Heart	heart
27	chr15:57880800-57881600	Enhancers	Brain Anterior Caudate	brain
28	chr15:57880800-57881800	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:57880800-57881800	Weak transcription	Right Atrium	heart
30	chr15:57880800-57882000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:57880800-57882000	Weak transcription	Lung	lung
32	chr15:57880800-57883000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:57880800-57883200	Weak transcription	Left Ventricle	heart
34	chr15:57881000-57881600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr15:57881000-57882200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr15:57881000-57883200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr15:57881000-57883400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:57881200-57881600	Enhancers	Hela-S3	cervix
39	chr15:57881200-57882000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:57881200-57883200	Enhancers	Fetal Lung	lung
41	chr15:57881200-57883200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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