Variant report

Variant	rs190849619
Chromosome Location	chr2:233793036-233793037
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr2:233792918-233793631	ECC-1	luminal epithelium:	n/a	chr2:233793150-233793157
2	CTCF	chr2:233793014-233793066	MCF-7	breast:	n/a	n/a
3	ZBTB7A	chr2:233792918-233793532	ECC-1	luminal epithelium:	n/a	chr2:233793150-233793157
4	CTCF	chr2:233793032-233793040	MCF-7	breast:	n/a	n/a
5	EGR1	chr2:233792832-233793355	ECC-1	luminal epithelium:	n/a	chr2:233793116-233793126 chr2:233793117-233793132 chr2:233793119-233793130 chr2:233793118-233793131 chr2:233793042-233793055
6	POLR2A	chr2:233792601-233793050	H1-neurons	neurons:	n/a	n/a
7	POLR2A	chr2:233792925-233793165	ECC-1	luminal epithelium:	n/a	n/a
8	CTCF	chr2:233793007-233793082	Pancreas_OC	pancreas:	n/a	n/a
9	SIN3A	chr2:233793029-233793693	H1-hESC	embryonic stem cell:	n/a	chr2:233793095-233793104

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233792964..233795634-chr2:233797623..233799367,2	K562	blood:

Variant related genes	Relation type
NGEF	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv834570	chr2:233639160-233805067	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3377192	chr2:233758324-233835472	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1014548	chr2:233777859-233816018	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv518226	chr2:233790447-233793517	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3376153	chr2:233791333-233794081	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3411164	chr2:233791958-233793981	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233789800-233793200	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr2:233791200-233793400	Bivalent/Poised TSS	NHLF	lung
3	chr2:233791200-233793800	Bivalent Enhancer	Spleen	Spleen
4	chr2:233791400-233793200	Weak transcription	Liver	Liver
5	chr2:233791400-233793600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:233791400-233793600	Bivalent Enhancer	Lung	lung
7	chr2:233791400-233794200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr2:233791600-233793200	Active TSS	A549	lung
9	chr2:233791600-233793600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr2:233791600-233798200	Weak transcription	HepG2	liver
11	chr2:233791800-233793200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:233791800-233793200	Active TSS	Esophagus	oesophagus
13	chr2:233791800-233793400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr2:233791800-233793400	Bivalent/Poised TSS	Psoas Muscle	Psoas
15	chr2:233791800-233793600	Enhancers	Primary B cells from cord blood	blood
16	chr2:233791800-233793600	Enhancers	Fetal Heart	heart
17	chr2:233791800-233793800	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:233791800-233794000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr2:233791800-233794000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr2:233791800-233794000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:233792000-233793200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:233792000-233793200	Active TSS	Brain Cingulate Gyrus	brain
23	chr2:233792000-233793200	Bivalent/Poised TSS	Placenta Amnion	Placenta Amnion
24	chr2:233792000-233793200	Active TSS	HSMM	muscle
25	chr2:233792000-233793400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:233792000-233793400	Active TSS	Brain Substantia Nigra	brain
27	chr2:233792000-233793600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
28	chr2:233792000-233793600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr2:233792000-233793600	Active TSS	Brain Anterior Caudate	brain
30	chr2:233792000-233793800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr2:233792000-233794000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
32	chr2:233792200-233793200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:233792200-233793200	Active TSS	Brain Hippocampus Middle	brain
34	chr2:233792200-233793400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr2:233792200-233793400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr2:233792200-233793400	Bivalent/Poised TSS	Thymus	Thymus
37	chr2:233792200-233793600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:233792200-233793600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:233792200-233793600	Bivalent/Poised TSS	NHEK	skin
40	chr2:233792400-233793200	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
41	chr2:233792400-233793200	Bivalent/Poised TSS	Fetal Brain Female	brain
42	chr2:233792400-233793200	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr2:233792400-233793200	Bivalent/Poised TSS	Ovary	ovary
44	chr2:233792400-233793200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
45	chr2:233792400-233793400	Active TSS	Primary hematopoietic stem cells	blood
46	chr2:233792400-233793400	Active TSS	Right Atrium	heart
47	chr2:233792400-233794400	Enhancers	Pancreas	Pancrea
48	chr2:233792400-233796000	Weak transcription	HSMMtube	muscle
49	chr2:233792400-233798000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr2:233792600-233793200	Active TSS	Primary T helper cells fromperipheralblood	blood

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