Variant report

Variant	rs190867388
Chromosome Location	chr11:58337289-58337290
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58332917..58335561-chr11:58336886..58338448,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv528190	chr11:58336620-58347765	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:58300600-58338600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:58309600-58338800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:58315600-58340400	Weak transcription	Stomach Mucosa	stomach
5	chr11:58318400-58341000	Weak transcription	Right Ventricle	heart
6	chr11:58318400-58344800	Weak transcription	Fetal Brain Male	brain
7	chr11:58318600-58344400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:58318800-58340600	Weak transcription	NHLF	lung
9	chr11:58318800-58341400	Weak transcription	Psoas Muscle	Psoas
10	chr11:58319200-58343000	Weak transcription	Fetal Brain Female	brain
11	chr11:58320000-58341000	Weak transcription	HSMMtube	muscle
12	chr11:58320200-58340800	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:58320600-58338200	Weak transcription	HMEC	breast
14	chr11:58321600-58340400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:58321800-58340400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:58321800-58341200	Weak transcription	Colonic Mucosa	Colon
17	chr11:58321800-58345000	Weak transcription	Ovary	ovary
18	chr11:58322400-58344200	Weak transcription	Fetal Lung	lung
19	chr11:58329400-58341000	Weak transcription	Brain Angular Gyrus	brain
20	chr11:58329400-58342600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:58329400-58344400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:58330200-58343000	Weak transcription	Fetal Kidney	kidney
23	chr11:58330400-58338800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
24	chr11:58330600-58345000	Weak transcription	Gastric	stomach
25	chr11:58331000-58338000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:58331400-58341000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:58332800-58340200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:58334400-58338200	Strong transcription	HSMM	muscle
29	chr11:58334600-58338400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr11:58334800-58339600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
31	chr11:58335000-58337400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:58335000-58338600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr11:58335400-58338800	Genic enhancers	Primary T cells fromperipheralblood	blood
34	chr11:58335600-58340400	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:58335800-58339800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:58335800-58340400	Weak transcription	Hela-S3	cervix
37	chr11:58336000-58337400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:58336000-58337600	Strong transcription	Adipose Nuclei	Adipose
39	chr11:58336000-58338200	Strong transcription	Brain Cingulate Gyrus	brain
40	chr11:58336000-58338400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:58336000-58338600	Strong transcription	Primary B cells from peripheral blood	blood
42	chr11:58336200-58337400	Strong transcription	Placenta	Placenta
43	chr11:58336200-58337600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:58336200-58337600	Strong transcription	Left Ventricle	heart
45	chr11:58336200-58337600	Enhancers	NHEK	skin
46	chr11:58336200-58337800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:58336200-58338200	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr11:58336200-58338200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr11:58336200-58338200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr11:58336200-58338200	Strong transcription	Rectal Mucosa Donor 29	rectum

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