Variant report

Variant	rs190868751
Chromosome Location	chr11:94277461-94277462
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:299)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:299 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr11:94276813-94277474	A549	lung:	n/a	n/a
2	E2F4	chr11:94277336-94277722	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr11:94276828-94277941	MCF-7	breast:	n/a	n/a
4	ESR1	chr11:94277256-94277587	T-47D	breast:	n/a	n/a
5	MYC	chr11:94277439-94277773	MCF-7	breast:	n/a	n/a
6	TFAP2A	chr11:94276920-94277740	Hela-S3	cervix:	n/a	chr11:94277327-94277342
7	PAX5	chr11:94277223-94277706	GM12878	blood:	n/a	n/a
8	CTCF	chr11:94277460-94277610	GM12867	blood:	n/a	n/a
9	MAX	chr11:94276463-94278246	HCT-116	colon:	n/a	chr11:94276987-94276997
10	MAZ	chr11:94276727-94278176	K562	blood:	n/a	chr11:94276987-94276997
11	RELA	chr11:94276144-94277715	GM19193	blood:	n/a	chr11:94276320-94276329 chr11:94276320-94276329
12	ZBTB33	chr11:94277151-94277581	HCT-116	colon:	n/a	n/a
13	POLR2A	chr11:94276783-94277700	K562	blood:	n/a	n/a
14	MAX	chr11:94276783-94277944	GM12878	blood:	n/a	chr11:94276987-94276997
15	POLR2A	chr11:94276731-94278094	GM18526	blood:	n/a	n/a
16	TAF1	chr11:94276871-94277762	K562	blood:	n/a	n/a
17	TBP	chr11:94276825-94277950	H1-hESC	embryonic stem cell:	n/a	n/a
18	EGR1	chr11:94276672-94277794	HCT-116	colon:	n/a	chr11:94277352-94277366 chr11:94276961-94276971
19	ETS1	chr11:94277234-94277532	A549	lung:	n/a	n/a
20	YY1	chr11:94277240-94277875	K562	blood:	n/a	n/a
21	POLR2A	chr11:94276324-94278276	GM19193	blood:	n/a	n/a
22	JUND	chr11:94277454-94277553	H1-hESC	embryonic stem cell:	n/a	n/a
23	TFAP2C	chr11:94276919-94277848	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr11:94276618-94277929	K562	blood:	n/a	n/a
25	WRNIP1	chr11:94277390-94277475	GM12878	blood:	n/a	n/a
26	POLR2A	chr11:94276856-94277642	H1-neurons	neurons:	n/a	n/a
27	GABPA	chr11:94276776-94277561	HL-60	blood:	n/a	n/a
28	TAF7	chr11:94276943-94277563	H1-hESC	embryonic stem cell:	n/a	n/a
29	MAX	chr11:94276666-94278264	K562	blood:	n/a	chr11:94276987-94276997
30	NFIC	chr11:94276887-94277830	ECC-1	luminal epithelium:	n/a	n/a
31	SRF	chr11:94276791-94277467	ECC-1	luminal epithelium:	n/a	n/a
32	TCF12	chr11:94276928-94277691	ECC-1	luminal epithelium:	n/a	n/a
33	POLR2A	chr11:94276533-94279695	HL-60	blood:	n/a	n/a
34	POLR2A	chr11:94276761-94277844	ECC-1	luminal epithelium:	n/a	n/a
35	ZBTB7A	chr11:94276956-94277723	ECC-1	luminal epithelium:	n/a	chr11:94277243-94277254
36	MXI1	chr11:94277206-94277577	Hela-S3	cervix:	n/a	n/a
37	E2F6	chr11:94276833-94278318	K562	blood:	n/a	chr11:94277003-94277014 chr11:94277092-94277102
38	SIN3A	chr11:94276651-94278975	H1-hESC	embryonic stem cell:	n/a	n/a
39	TBP	chr11:94276737-94278119	K562	blood:	n/a	n/a
40	POLR2A	chr11:94276767-94278145	GM12892	blood:	n/a	n/a
41	POLR2A	chr11:94277357-94277643	MCF10A-Er-Src	breast:	n/a	n/a
42	SP1	chr11:94277264-94277672	GM12878	blood:	n/a	n/a
43	POLR2A	chr11:94276820-94277609	GM12878	blood:	n/a	n/a
44	REST	chr11:94276772-94277886	HL-60	blood:	n/a	n/a
45	SIN3AK20	chr11:94277273-94277747	K562	blood:	n/a	n/a
46	HMGN3	chr11:94276810-94278323	K562	blood:	n/a	n/a
47	MAX	chr11:94276750-94277741	HepG2	liver:	n/a	chr11:94276987-94276997
48	POLR2A	chr11:94276756-94277830	GM12891	blood:	n/a	n/a
49	ELF1	chr11:94276774-94277839	GM12878	blood:	n/a	chr11:94276988-94277000 chr11:94276959-94276971
50	POLR2A	chr11:94276994-94277770	Hela-S3	cervix:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:94277451-94277501	HAEpiC	amniotic membrane:	n/a
2	chr11:94277451-94277501	NHDF-neo	bronchial:	n/a
3	chr11:94277451-94277501	U87	brain:	n/a
4	chr11:94277451-94277501	GM19239	blood:	n/a
5	chr11:94277451-94277501	H1-hESC	embryonic stem cell:	embryo
6	chr11:94277451-94277501	IMR90	lung:	fetal
7	chr11:94277451-94277501	HCM	heart:	n/a
8	chr11:94277451-94277501	ECC-1	luminal epithelium:	n/a
9	chr11:94277451-94277501	Hela-S3	cervix:	n/a
10	chr11:94277451-94277501	MCF10A-Er-Src	breast:	n/a
11	chr11:94277451-94277501	HPAEpiC	pulmonary alveolar:	n/a
12	chr11:94277451-94277501	SK-N-SH_RA	brain:	n/a
13	chr11:94277451-94277501	NH-A	brain:	n/a
14	chr11:94277451-94277501	A549	lung:	n/a
15	chr11:94277451-94277501	ovcar-3	ovarian:	n/a
16	chr11:94277451-94277501	GM12892	blood:	n/a
17	chr11:94277451-94277501	PFSK-1	brain:	n/a
18	chr11:94277451-94277501	AG10803	skin:	n/a
19	chr11:94277451-94277501	HRCEpiC	kidney:	n/a
20	chr11:94277451-94277501	HepG2	liver:	n/a
21	chr11:94277451-94277501	K562	blood:	n/a
22	chr11:94277451-94277501	NB4	blood:	n/a
23	chr11:94277451-94277501	GM12878	blood:	n/a
24	chr11:94277451-94277501	NT2-D1	testis:	n/a
25	chr11:94277451-94277501	HIPEpiC	eye:	n/a
26	chr11:94277451-94277501	AG09319	gingival:	n/a
27	chr11:94277451-94277501	HCT-116	colon:	n/a
28	chr11:94277451-94277501	PrEC	prostate:	n/a
29	chr11:94277451-94277501	BE2_C	brain:	n/a
30	chr11:94277451-94277501	MCF-7	breast:	n/a
31	chr11:94277451-94277501	NHBE	bronchial:	n/a
32	chr11:94277451-94277501	HUVEC	blood vessel:	n/a
33	chr11:94277451-94277501	HCF	heart:	n/a
34	chr11:94277451-94277501	HEK293	kidney:	embryo
35	chr11:94277451-94277501	SK-N-MC	brain:	n/a
36	chr11:94277451-94277501	HCPEpiC	choroid plexus:	n/a
37	chr11:94277451-94277501	HEEpiC	esophagus:	n/a
38	chr11:94277451-94277501	AG04449	skin:	fetal
39	chr11:94277451-94277501	RPTEC	kidney:	n/a
40	chr11:94277451-94277501	BJ	skin:	n/a
41	chr11:94277451-94277501	HRPEpiC	eye:	n/a
42	chr11:94277451-94277501	GM06990	blood:	n/a
43	chr11:94277451-94277501	Hepatocyte	liver:	n/a
44	chr11:94277451-94277501	HNPCEpiC	eye:	n/a
45	chr11:94277451-94277501	SAEC	small airway:	n/a
46	chr11:94277451-94277501	CMK	blood:	n/a
47	chr11:94277451-94277501	ProgFib	skin:	n/a
48	chr11:94277451-94277501	SK-N-SH	brain:	n/a
49	chr11:94277451-94277501	AoSMC	blood vessel:	n/a
50	chr11:94277451-94277501	SKMC	muscle:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:94277201..94277899-chr3:150421042..150421878,2	NB4	blood:
2	chr11:94277458..94279077-chr11:94299379..94301250,3	K562	blood:
3	chr11:94225466..94228271-chr11:94275709..94278301,3	K562	blood:
4	chr11:94226771..94229140-chr11:94275887..94279295,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRE11A-3	chr11:94276131-94277949	NONHSAT023724

No data

Variant related genes	Relation type
PIWIL4	TF binding region
PIWIL4	CpG island
ENSG00000240137	Chromatin interaction
ENSG00000134627	Chromatin interaction
ENSG00000020922	Chromatin interaction
ENSG00000168876	Chromatin interaction
ENSG00000163645	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390466	chr11:94276729-94279277	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94276200-94277800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:94276400-94277600	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr11:94276400-94279200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr11:94276400-94279200	Active TSS	Brain Substantia Nigra	brain
5	chr11:94276400-94279600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:94276400-94280000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr11:94276600-94277800	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:94276600-94277800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:94276600-94278000	Active TSS	Right Ventricle	heart
10	chr11:94276600-94278200	Active TSS	Pancreas	Pancrea
11	chr11:94276600-94278200	Active TSS	Right Atrium	heart
12	chr11:94276600-94278200	Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr11:94276600-94278200	Active TSS	A549	lung
14	chr11:94276600-94278400	Active TSS	Fetal Brain Female	brain
15	chr11:94276600-94278600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:94276600-94278600	Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr11:94276600-94278600	Active TSS	Psoas Muscle	Psoas
18	chr11:94276600-94278600	Active TSS	NHLF	lung
19	chr11:94276600-94279200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:94276600-94279200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:94276600-94279400	Active TSS	Hela-S3	cervix
22	chr11:94276600-94279600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr11:94276600-94279600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:94276600-94281000	Active TSS	Aorta	Aorta
25	chr11:94276800-94277600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:94276800-94277800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:94276800-94277800	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr11:94276800-94277800	Active TSS	Thymus	Thymus
29	chr11:94276800-94278000	Active TSS	H9 Cell Line	embryonic stem cell
30	chr11:94276800-94278000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:94276800-94278000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:94276800-94278000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr11:94276800-94278000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:94276800-94278000	Active TSS	Esophagus	oesophagus
35	chr11:94276800-94278000	Active TSS	Left Ventricle	heart
36	chr11:94276800-94278000	Active TSS	Stomach Smooth Muscle	stomach
37	chr11:94276800-94278000	Active TSS	Spleen	Spleen
38	chr11:94276800-94278200	Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr11:94276800-94278200	Active TSS	Fetal Lung	lung
40	chr11:94276800-94278200	Active TSS	Ovary	ovary
41	chr11:94276800-94278400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:94276800-94278400	Active TSS	Brain Angular Gyrus	brain
43	chr11:94276800-94278600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:94276800-94278600	Active TSS	Brain Anterior Caudate	brain
45	chr11:94276800-94278600	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr11:94276800-94278600	Active TSS	Fetal Intestine Small	intestine
47	chr11:94276800-94278600	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr11:94276800-94279000	Active TSS	Colon Smooth Muscle	Colon
49	chr11:94276800-94279200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:94276800-94279200	Active TSS	Brain Hippocampus Middle	brain

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