Variant report

Variant	rs1909002
Chromosome Location	chr3:98024056-98024057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1497547	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16839491	1.00[EUR][1000 genomes]
rs1846084	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1909001	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56731928	1.00[EUR][1000 genomes]
rs58681396	0.92[AFR][1000 genomes]
rs59124064	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59403104	1.00[EUR][1000 genomes]
rs59518469	1.00[EUR][1000 genomes]
rs59879616	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60579668	1.00[EUR][1000 genomes]
rs60903056	1.00[EUR][1000 genomes]
rs6786574	1.00[EUR][1000 genomes]
rs72931085	1.00[EUR][1000 genomes]
rs72932838	1.00[EUR][1000 genomes]
rs72932843	1.00[EUR][1000 genomes]
rs72932901	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72934924	1.00[EUR][1000 genomes]
rs72934931	1.00[EUR][1000 genomes]
rs72934948	1.00[AFR][1000 genomes]
rs72934978	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72934981	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72937126	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72939142	0.92[AFR][1000 genomes]
rs73854543	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv877212	chr3:97931105-98033400	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv1842860	chr3:97934241-98075543	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1009918	chr3:97946030-98155450	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98024000-98025000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links