Variant report

Variant	rs190904389
Chromosome Location	chr17:17029840-17029841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17023341..17025938-chr17:17027098..17030092,2	K562	blood:
2	chr17:17028360..17030286-chr17:17031836..17034332,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907728	chr17:17013189-17095487	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv984510	chr17:17015688-17048858	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524958	chr17:17029718-17060805	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17006200-17033000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr17:17010000-17032000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:17012000-17035200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr17:17015400-17035200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:17015800-17030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr17:17019800-17031200	Weak transcription	Hela-S3	cervix
7	chr17:17023000-17030200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr17:17023200-17034200	Weak transcription	NH-A	brain
9	chr17:17023600-17030600	Weak transcription	Osteobl	bone
10	chr17:17024200-17043200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr17:17024400-17030200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr17:17024400-17030200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:17024400-17030200	Weak transcription	HMEC	breast
14	chr17:17024400-17032800	Weak transcription	HUVEC	blood vessel
15	chr17:17024400-17039800	Weak transcription	Small Intestine	intestine
16	chr17:17024600-17036000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr17:17024600-17045600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr17:17024800-17030000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr17:17024800-17030200	Weak transcription	Liver	Liver
20	chr17:17024800-17030200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr17:17024800-17030600	Weak transcription	HepG2	liver
22	chr17:17024800-17034200	Weak transcription	Fetal Kidney	kidney
23	chr17:17025000-17030000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr17:17025000-17030200	Weak transcription	Fetal Lung	lung
25	chr17:17025000-17030200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr17:17025000-17031400	Weak transcription	Ovary	ovary
27	chr17:17025000-17031400	Weak transcription	Stomach Mucosa	stomach
28	chr17:17025200-17030200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr17:17026000-17030400	Enhancers	Left Ventricle	heart
30	chr17:17026400-17034200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr17:17026600-17030200	Weak transcription	Colon Smooth Muscle	Colon
32	chr17:17026600-17030200	Weak transcription	Pancreas	Pancrea
33	chr17:17027200-17032600	Enhancers	Psoas Muscle	Psoas
34	chr17:17027400-17030200	Enhancers	Thymus	Thymus
35	chr17:17027400-17030400	Enhancers	Fetal Thymus	thymus
36	chr17:17027400-17031800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr17:17027400-17032000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr17:17027400-17032200	Enhancers	Right Atrium	heart
39	chr17:17027400-17042400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr17:17027400-17043000	Strong transcription	NHEK	skin
41	chr17:17027400-17043400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr17:17027600-17030000	Enhancers	Spleen	Spleen
43	chr17:17027600-17030800	Enhancers	Brain Angular Gyrus	brain
44	chr17:17027600-17033400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr17:17027800-17030000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr17:17027800-17030400	Enhancers	Fetal Brain Male	brain
47	chr17:17027800-17031000	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr17:17027800-17032200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr17:17028000-17032000	Enhancers	Fetal Heart	heart
50	chr17:17028000-17038200	Genic enhancers	Fetal Muscle Trunk	muscle

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