The 2.0 version of rSNPBase
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Variant report
Variant
rs190933567
Chromosome Location
chr8:34321143-34321144
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr8:34320589..34321589-chr8:87526521..87527178,2
HCT-116
colon:
2
chr8:34319464..34321482-chr8:34323903..34326171,2
K562
blood:
3
chr8:34321069..34321569-chr8:87526445..87527042,3
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000176623
Chromatin interaction
ENSG00000085719
Chromatin interaction
Extended variants information (count: 1 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv6147
chr8:34314029-34359124
Weak transcription Enhancers
Chromatin interactive region
2 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links