Variant report

Variant	rs190948060
Chromosome Location	chr2:56084018-56084019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2510458	chr2:56082815-56084409	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3503313	chr2:56082848-56084846	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv5753	chr2:56083327-56084062	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2296549	chr2:56083347-56084047	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56071600-56086800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:56079000-56088600	Weak transcription	Fetal Lung	lung
3	chr2:56082400-56085400	Enhancers	HMEC	breast
4	chr2:56082600-56085200	Enhancers	Hela-S3	cervix
5	chr2:56082600-56085400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:56082600-56086000	Enhancers	NHEK	skin
7	chr2:56082600-56086400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:56082800-56085600	Enhancers	Osteobl	bone
9	chr2:56083000-56084600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr2:56083200-56084200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:56083200-56088600	Weak transcription	Ovary	ovary
12	chr2:56083400-56088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:56083800-56084200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:56083800-56084200	Weak transcription	Placenta	Placenta
15	chr2:56083800-56084400	Enhancers	Aorta	Aorta
16	chr2:56084000-56084200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:56084000-56084600	Flanking Active TSS	A549	lung
18	chr2:56084000-56084600	Enhancers	HSMM	muscle
19	chr2:56084000-56085000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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