Variant report

Variant	rs190960080
Chromosome Location	chrX:55101327-55101328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:183)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chrX:55101321-55101552	K562	blood:	n/a	n/a
2	MAX	chrX:55101171-55101613	K562	blood:	n/a	chrX:55101248-55101258
3	NRF1	chrX:55101314-55101514	K562	blood:	n/a	chrX:55101439-55101450
4	MAX	chrX:55101297-55101558	K562	blood:	n/a	n/a
5	CBX3	chrX:55101260-55101617	K562	blood:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chrX:55101289-55101339	ovcar-3	ovarian:	n/a
2	chrX:55101301-55101351	HEEpiC	esophagus:	n/a
3	chrX:55101301-55101351	AG09309	skin:	n/a
4	chrX:55101327-55101377	HNPCEpiC	eye:	n/a
5	chrX:55101327-55101377	GM19239	blood:	n/a
6	chrX:55101289-55101339	GM12891	blood:	n/a
7	chrX:55101327-55101377	HCM	heart:	n/a
8	chrX:55101301-55101351	GM12878	blood:	n/a
9	chrX:55101301-55101351	SK-N-SH	brain:	n/a
10	chrX:55101327-55101377	Jurkat	blood:	n/a
11	chrX:55101289-55101339	NH-A	brain:	n/a
12	chrX:55101301-55101351	HPAEpiC	pulmonary alveolar:	n/a
13	chrX:55101289-55101339	GM19239	blood:	n/a
14	chrX:55101301-55101351	ProgFib	skin:	n/a
15	chrX:55101327-55101377	BJ	skin:	n/a
16	chrX:55101289-55101339	HRE	kidney:	n/a
17	chrX:55101327-55101377	HUVEC	blood vessel:	n/a
18	chrX:55101289-55101339	HepG2	liver:	n/a
19	chrX:55101301-55101351	AoSMC	blood vessel:	n/a
20	chrX:55101301-55101351	AG09319	gingival:	n/a
21	chrX:55101289-55101339	GM12878	blood:	n/a
22	chrX:55101327-55101377	CMK	blood:	n/a
23	chrX:55101327-55101377	NHDF-neo	bronchial:	n/a
24	chrX:55101301-55101351	PANC-1	pancreas:	n/a
25	chrX:55101327-55101377	PFSK-1	brain:	n/a
26	chrX:55101301-55101351	HAEpiC	amniotic membrane:	n/a
27	chrX:55101289-55101339	BJ	skin:	n/a
28	chrX:55101327-55101377	NHBE	bronchial:	n/a
29	chrX:55101289-55101339	PFSK-1	brain:	n/a
30	chrX:55101327-55101377	Hepatocyte	liver:	n/a
31	chrX:55101289-55101339	PANC-1	pancreas:	n/a
32	chrX:55101301-55101351	H1-hESC	embryonic stem cell:	embryo
33	chrX:55101327-55101377	HRE	kidney:	n/a
34	chrX:55101301-55101351	NB4	blood:	n/a
35	chrX:55101327-55101377	SK-N-SH_RA	brain:	n/a
36	chrX:55101327-55101377	ProgFib	skin:	n/a
37	chrX:55101301-55101351	RPTEC	kidney:	n/a
38	chrX:55101327-55101377	SK-N-MC	brain:	n/a
39	chrX:55101289-55101339	BE2_C	brain:	n/a
40	chrX:55101289-55101339	NB4	blood:	n/a
41	chrX:55101301-55101351	IMR90	lung:	fetal
42	chrX:55101327-55101377	Hela-S3	cervix:	n/a
43	chrX:55101327-55101377	AG09309	skin:	n/a
44	chrX:55101289-55101339	T-47D	breast:	n/a
45	chrX:55101327-55101377	SKMC	muscle:	n/a
46	chrX:55101327-55101377	IMR90	lung:	fetal
47	chrX:55101301-55101351	LNCaP	prostate:	n/a
48	chrX:55101327-55101377	MCF-7	breast:	n/a
49	chrX:55101301-55101351	SK-N-SH_RA	brain:	n/a
50	chrX:55101327-55101377	AG04450	lung:	fetal

No data

Variant related genes	Relation type
PAGE2B	TF binding region
PAGE2B	CpG island

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19730	chrX:55086753-55121905	Enhancers Bivalent Enhancer	TF binding region CpG island	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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