Variant report

Variant	rs1909743
Chromosome Location	chr5:106231645-106231646
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10464030	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12658425	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1353971	0.92[ASN][1000 genomes]
rs1392476	0.92[ASN][1000 genomes]
rs1392477	0.90[ASN][1000 genomes]
rs1580831	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580832	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159402	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs159403	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1909744	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2086113	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2086114	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2126918	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2447764	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2447765	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2454889	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2454890	0.83[ASN][1000 genomes]
rs2463034	0.92[ASN][1000 genomes]
rs2463036	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2463037	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2463039	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs295027	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs295028	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs295029	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs295030	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs295031	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs296244	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs296245	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2964615	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35399767	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35989639	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6874009	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs899184	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs904762	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599285	chr5:105355890-106271223	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016354	chr5:105752391-106392762	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1017901	chr5:105847628-106298378	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2752055	chr5:106034797-106280515	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2760928	chr5:106058868-106233117	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1020718	chr5:106058868-106293873	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv882678	chr5:106130200-106255758	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv462378	chr5:106162197-106293263	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv599301	chr5:106162197-106293263	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv830439	chr5:106192038-106383828	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv599302	chr5:106221217-106232732	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv599303	chr5:106223536-106233578	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv518559	chr5:106223536-106260621	Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv818374	chr5:106223536-106260621	Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv599304	chr5:106223536-106271223	Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv1016373	chr5:106226427-106260621	Weak transcription Enhancers Active TSS Strong transcription	n/a	n/a	inside rSNPs	n/a
18	esv2763930	chr5:106226439-106260621	Active TSS Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
19	esv2757130	chr5:106227109-106258750	Weak transcription Enhancers Active TSS Strong transcription	n/a	n/a	inside rSNPs	n/a
20	esv2759367	chr5:106227109-106258750	Strong transcription Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
21	nsv1025126	chr5:106227109-106260621	Enhancers Active TSS Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
22	nsv10740	chr5:106227368-106241028	Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
23	nsv1017687	chr5:106227452-106240564	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
24	nsv823166	chr5:106228810-106234739	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
25	nsv599309	chr5:106229059-106231720	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
26	nsv599310	chr5:106229059-106232732	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
27	nsv599311	chr5:106229059-106232865	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
28	nsv599312	chr5:106229059-106233074	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
29	nsv599313	chr5:106229059-106233578	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
30	nsv515018	chr5:106229645-106233109	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
31	nsv1033796	chr5:106229661-106240564	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
32	nsv441960	chr5:106229673-106233117	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
33	nsv599315	chr5:106229922-106233074	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
34	nsv599316	chr5:106229922-106233578	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
35	nsv599318	chr5:106230182-106233074	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
36	nsv599319	chr5:106230182-106233578	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
37	nsv599320	chr5:106230234-106232865	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
38	nsv599321	chr5:106230234-106233074	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
39	nsv599322	chr5:106230234-106233578	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
40	nsv599323	chr5:106230234-106260621	Enhancers Weak transcription Active TSS Strong transcription	n/a	n/a	inside rSNPs	n/a
41	nsv599324	chr5:106230375-106232865	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
42	nsv599325	chr5:106230375-106233074	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
43	nsv599326	chr5:106230375-106233578	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
44	nsv599327	chr5:106230630-106233578	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
45	esv3388330	chr5:106231103-106233251	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106231400-106233400	Weak transcription	Primary monocytes fromperipheralblood	blood

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